Co-expression analysis

Gene ID	Zm.6743.1.S1_at
Gene name	empty pericarp 2
Homology with Arabidopsis	Similar to At4g15802: - (HF=7e+0)
Module size	8 genes
NF	0.58
%ile	76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	0.95	Zm.6743.1.S1_at	AF494284.1	empty pericarp 2	-	7e+0	At4g15802	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.6242.2.A1_a_at	CF037850	INDETERMINATE-related protein 9	-	5e+0	At3g60280	UCC3 (UCLACYANIN 3)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.95	Zm.8850.1.A1_at	CO533203	hypothetical protein LOC100272618	-	4e-2	At3g17940	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.95	Zm.18516.1.A1_x_at	CO526437	-	-	2e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.95	Zm.18376.1.A1_at	AI615179	hypothetical protein LOC100274438	-	2e-22	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.13669.1.S1_x_at	AY107043.1	-	-	2e-1	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.95	Zm.4745.1.A1_at	AI739741	hypothetical protein LOC100194119	-	1e-3	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.96	Zm.5578.2.S1_a_at	BM380773	hypothetical protein LOC100193656	-	1e-4	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.9	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.2	94.5	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.0	94.0	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.0	94.0	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.5	92.6	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
2.2	91.3	GSM258538	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.2	91.3	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.2	91.3	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.2	91.3	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.2	91.3	GSM258533	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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