Co-expression analysis

Gene ID Zm.6741.1.A1_at
Gene name hypothetical protein LOC100275507
Homology with ArabidopsisSimilar to At5g60330: unknown protein (HF=6e+0)
Module size 17 genes
NF 0.40
%ile 46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8696.30.99Zm.6741.1.A1_atAI396113hypothetical protein LOC100275507-6e+0At5g60330unknown proteinO.I.H.G.S.X.
0.6179.51.00ZmAffx.781.1.A1_atAI746268--1e+1At4g37450AGP18 (ARABINOGALACTAN PROTEIN 18)O.I.H.G.S.X.
0.5775.10.99Zm.13728.1.S1_atAF332172.1alpha-expansin 4-2e-19At3g55500ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)O.I.H.G.S.X.
0.5166.40.99Zm.5028.1.S1_atAY103976.1splicing factor, arginine/serine-rich 12-1e+0At4g23770unknown proteinO.I.H.G.S.X.
0.4556.40.99Zm.4848.2.S1_a_atAI770366SIR2-like histone deacetylase-2e-1At5g55760SRT1 (sirtuin 1)O.I.H.G.S.X.
0.4556.40.99Zm.434.1.A1_atAF069909.1pyruvate dehydrogenase E1 beta subunit isoform 2-7e-23At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.
0.4251.30.99Zm.13616.1.S1_atAY107497.1--2e+0At4g25315Expressed proteinO.I.H.G.S.X.
0.4048.50.99--O.I.H.G.S.X.
0.3742.31.00ZmAffx.525.1.S1_atAI711680--8e-1At5g23170protein kinase family proteinO.I.H.G.S.X.
0.3538.90.99Zm.13940.1.S1_atAI677337hypothetical protein LOC100193246-1e+0At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.
0.3131.60.99Zm.14116.1.S1_atAY107756.1--6e-14At4g17020transcription factor-relatedO.I.H.G.S.X.
0.3029.80.99Zm.2614.2.A1_atCD436098--4e-1At4g31780MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)O.I.H.G.S.X.
0.3029.81.00Zm.18157.1.A1_atCO533028--2e-1At4g20290unknown proteinO.I.H.G.S.X.
0.2828.11.00ZmAffx.105.1.S1_atAI665537--3e+0At4g20000VQ motif-containing proteinO.I.H.G.S.X.
0.2724.60.99ZmAffx.982.4.S1_atAW787457--3e+0At4g17615CBL1 (CALCINEURIN B-LIKE PROTEIN 1)O.I.H.G.S.X.
0.2318.61.00Zm.18392.1.A1_atCO533252--7e+0At2g27130protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2318.61.00Zm.15937.1.A1_atCO520791--5e+0At3g25200unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.898.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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