Co-expression analysis

Gene ID	Zm.6732.4.S1_at
Gene name	hypothetical protein LOC100193321
Homology with Arabidopsis	Similar to At4g10110: RNA recognition motif (RRM)-containing protein (HF=1e-2)
Module size	14 genes
NF	0.40
%ile	45.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.91	Zm.6732.4.S1_at	AY105066.1	hypothetical protein LOC100193321	-	1e-2	At4g10110	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.93	Zm.646.2.A1_a_at	AF129859.1	CENPCA protein	-	7e-1	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.92	Zm.8150.1.A1_at	BM073089	hypothetical protein LOC100191359	-	5e-1	At4g24730	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.5258.1.A1_at	AI615160	-	-	8e+0	At4g01595	ATP binding / MAP kinase/ protein kinase	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.92	Zm.13852.1.A1_at	AF351192.1	-	-	2e+1	At5g15970	KIN2	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.92	Zm.10128.1.S1_at	CA404676	-	-	2e+0	At2g30760	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.92	Zm.3086.2.A1_at	CF633704	-	-	5e+0	At4g11350	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.92	Zm.10194.1.A1_at	BQ619305	hypothetical protein LOC100276952	-	1e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.5258.1.S1_at	AI615160	-	-	8e+0	At4g01595	ATP binding / MAP kinase/ protein kinase	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.92	Zm.3086.1.A1_at	CF628082	alpha-1,4-glucan-protein synthase	-	2e-5	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.92	Zm.15425.1.A1_at	AY105625.1	hypothetical protein LOC100273115	-	1e-5	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.96	Zm.2368.1.A1_at	AY109497.1	-	-	4e-21	At4g32390	phosphate translocator-related	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.7306.1.S1_at	AB044567.1	Ca2+/H+ antiporter	-	7e-11	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.93	Zm.7872.1.S1_at	BM350613	TBC1 domain family member 22A	-	2e-9	At2g30710	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.1	97.4	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.1	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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