Co-expression analysis

Gene ID	Zm.6721.12.A1_s_at
Gene name	Histone H4
Homology with Arabidopsis	Similar to At1g07660: histone H4 (HF=6e-18)
Module size	18 genes
NF	0.58
%ile	77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.92	Zm.6721.12.A1_s_at	BG265991	Histone H4	-	6e-18	At1g07660	histone H4	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.96	Zm.4190.1.A1_at	BE344878	-	-	9e-31	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.95	Zm.6443.1.A1_at	CA404297	hypothetical protein AY107910	-	4e-25	At2g02560	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.95	Zm.2601.1.S1_at	U45856.1	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3 /// glyceraldehyde-3-phosphate dehydrogenase	-	3e-139	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.95	Zm.15961.1.S1_s_at	CK369834	-	-	4e-1	At3g19920	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.96	Zm.5290.1.S1_at	AY104548.1	F-box domain containing protein	-	4e+0	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.95	Zm.18743.1.A1_at	CK985678	palmitoyltransferase ZDHHC9	-	6e-17	At5g50020	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.95	Zm.2376.4.A1_x_at	CK368489	cortical cell-delineating protein	-	6e+0	At3g24510	-	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.95	Zm.14040.1.A1_at	CF051487	C-4 methylsterol oxidase	-	6e-20	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.3144.1.S1_at	CD441537	nucleic acid binding protein	-	3e+0	At4g20420	tapetum-specific protein-related	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.95	Zm.56.1.S1_at	U12233.1	GTP binding protein2	-	4e-9	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.96	Zm.3772.1.S1_at	CF010220	Zea m 1 allergen	-	6e-4	At2g40470	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.95	Zm.9958.2.A1_at	CA399148	-	-	2e+0	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.95	Zm.15961.1.S1_a_at	CK369834	-	-	4e-1	At3g19920	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.95	Zm.3756.1.A1_at	BE025409	-	-	8e-3	At2g24520	AHA5 (Arabidopsis H(+)-ATPase 5)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.3455.2.A1_at	BM266938	hypothetical protein LOC100276619	-	1e-1	At2g27390	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.5277.1.S1_at	AI619073	-	-	1e+0	At4g39750	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.15971.1.S1_at	CF638101	40S ribosomal protein S27a	-	1e-44	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	95.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6	92.9	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.5	92.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage