Co-expression analysis

Gene ID	Zm.6713.1.A1_at
Gene name	ATP-citrate synthase
Homology with Arabidopsis	Similar to At1g09430: ACLA-3 (HF=1e-36)
Module size	8 genes
NF	0.63
%ile	84.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.88	Zm.6713.1.A1_at	CK828034	ATP-citrate synthase	-	1e-36	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please select
0.82	94.6	0.89	Zm.15515.1.S1_at	CA404046	-	-	8e-1	At4g00830	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.92	Zm.12663.1.S1_at	BQ703906	hypothetical protein LOC100279518	-	3e-2	At5g46720	-	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.86	Zm.9909.1.A1_at	BM332451	-	-	4e+0	At5g15725	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.88	Zm.10199.1.A1_at	BM339092	hypothetical protein LOC100193850	-	2e-5	At1g06890	transporter-related	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.89	Zm.17363.1.S1_at	CK370960	-	-	2e-2	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.89	Zm.11931.1.S1_at	CD983258	px19-like protein	-	4e-1	At1g59590	ZCF37	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.91	Zm.2917.1.A1_at	AW091235	Hypothetical protein LOC100192661	-	1e-22	At3g51850	CPK13	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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