Co-expression analysis

Gene ID	Zm.6671.1.S1_a_at
Gene name	germin-like protein 1
Homology with Arabidopsis	Similar to At3g23167: LCR39 (Low-molecular-weight cysteine-rich 39) (HF=7e+0)
Module size	13 genes
NF	0.48
%ile	61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	94.6	0.96	Zm.6671.1.S1_a_at	BM379927	germin-like protein 1	-	7e+0	At3g23167	LCR39 (Low-molecular-weight cysteine-rich 39)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.14807.1.S1_at	BU050489	Hypothetical protein LOC100192365	-	3e+0	At5g15560	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.16988.1.A1_at	L10634.1	beta-7 tubulin	-	4e-117	At5g23860	TUB8	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.19234.1.A1_at	AI622555	hypothetical protein LOC100191668	-	3e-1	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.96	Zm.7021.1.S1_at	CD440551	mitochondrial import inner membrane translocase subunit Tim8	-	3e-4	At5g50810	TIM8	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.157.1.S1_at	AY107763.1	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.3168.1.A1_x_at	AW331178	-	-	5e-2	At3g51960	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.16861.2.S1_at	AW498347	L-ascorbate oxidase	-	7e-4	At1g55570	sks12 (SKU5 Similar 12)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.9984.1.A1_at	CO529085	Hypothetical protein LOC100217031	-	4e-4	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	ZmAffx.1315.1.S1_at	40794996-143	-	-	2e+0	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.4623.1.S1_at	AI372203	Hypothetical protein LOC100217143	-	6e-2	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.3	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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