Co-expression analysis

Gene ID Zm.6666.1.S1_x_at
Gene name hypothetical protein LOC100192879
Homology with ArabidopsisSimilar to At1g64520: RPN12a (Regulatory Particle non-ATPase 12a) (HF=2e-23)
Module size 6 genes
NF 0.51
%ile 65.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.95Zm.6666.1.S1_x_atCF049927hypothetical protein LOC100192879-2e-23At1g64520RPN12a (Regulatory Particle non-ATPase 12a)O.I.H.G.S.X.
0.6179.50.96Zm.2821.1.A1_s_atBM351274hypothetical protein LOC100278693-2e+0At2g28510Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.6179.50.96Zm.7712.1.A1_atBQ539501--4e+0At4g30097unknown proteinO.I.H.G.S.X.
0.5571.60.96Zm.13249.1.S1_a_atX98496.1embryo surrounding region1 /// ESR1c1 protein-7e-2At1g29380-O.I.H.G.S.X.
0.5065.70.96Zm.15219.2.A1_a_atBM334263--2e-2At5g45550mob1/phocein family proteinO.I.H.G.S.X.
0.3029.80.95Zm.206.4.A1_x_atCF04818840S ribosomal subunit protein S21-4e-16At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.098.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.090.2GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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