Co-expression analysis

Gene ID	Zm.6615.1.A1_at
Gene name	hypothetical protein LOC100274676
Homology with Arabidopsis	Similar to At3g24440: VRN5 (VERNALIZATION 5) (HF=6e-3)
Module size	38 genes
NF	0.14
%ile	9.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	0.90	Zm.6615.1.A1_at	AI629740	hypothetical protein LOC100274676	-	6e-3	At3g24440	VRN5 (VERNALIZATION 5)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.17104.1.A1_at	CF919907	hypothetical protein LOC100216774	-	8e-3	At5g66052	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.95	Zm.5851.15.S1_a_at	AI759130	-	-	9e-1	At2g04031	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.4793.3.A1_a_at	CD995492	hypothetical protein LOC100193376	-	5e-3	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.90	Zm.490.1.S1_a_at	AF216853.1	coatomer protein2	-	9e-25	At2g34840	coatomer protein epsilon subunit family protein / COPE family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.675.2.S1_at	AF332178.1	beta-expansin 5	-	3e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.4760.1.A1_at	AY108728.1	hypothetical protein LOC100276972	-	5e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.675.2.A1_at	AF332178.1	beta-expansin 5	-	3e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.17103.1.A1_at	AW331809	-	-	1e-6	At2g01330	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.93	Zm.783.2.A1_at	BM348433	hypothetical protein LOC100193969	-	8e-2	At1g50170	ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.92	Zm.13842.1.A1_at	AY104042.1	-	-	1e-1	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.5025.1.A1_at	BM073031	-	-	1e+0	At2g06908	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.3207.1.A1_at	BE553061	hypothetical protein LOC100191840	-	6e+0	At5g62900	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.92	ZmAffx.1000.1.A1_at	AI881297	-	-	3e+0	At4g32290	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.93	Zm.17907.1.S1_at	CF002848	-	-	5e-1	At4g31860	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	Zm.5085.2.S1_at	AI881825	-	-	2e-10	At5g51740	peptidase M48 family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.95	Zm.3179.1.S1_at	CO518092	hypothetical protein LOC100272487	-	2e-29	At3g04500	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.93	Zm.6276.1.A1_at	AW191102	-	-	1e+0	At4g23882	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.94	Zm.17908.1.S1_at	CK786805	-	-	3e-1	At1g19960	-	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.94	Zm.341.2.A1_a_at	AI881632	-	-	8e-44	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.94	Zm.34.5.A1_x_at	AI734535	-	-	4e-2	At2g36950	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.95	Zm.4100.1.S1_at	AI834651	-	-	7e+0	At3g22680	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.94	Zm.17552.1.A1_at	CK348028	-	-	1e-1	At3g44460	DPBF2	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.93	Zm.14502.1.S1_at	CO531791	co-chaperone protein SBA1	-	6e-4	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.93	Zm.16594.1.A1_at	BM334126	hypothetical protein LOC100277854	-	1e+0	At1g61410	tolA protein-related	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.94	Zm.4271.5.S1_x_at	AI881217	Hypothetical protein LOC100191665	-	2e+1	At3g55470	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.96	Zm.7583.1.A1_at	BM339440	-	-	2e+1	At5g57181	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.94	Zm.10850.1.S1_at	AY106263.1	ZIM motif family protein	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.94	Zm.700.1.A1_at	CA403882	heat shock 70 kDa protein	-	2e-54	At5g09590	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.95	Zm.1442.3.A1_at	CK371340	hypothetical protein LOC100280177	-	7e-46	At5g59850	40S ribosomal protein S15A (RPS15aF)	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.94	Zm.3129.1.A1_at	BM378126	-	-	4e+0	At2g17870	cold-shock DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.95	Zm.3674.1.S1_at	AW037202	-	-	3e+0	At2g29880	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.95	Zm.737.1.A1_a_at	D45403.1	cysteine protease	-	2e-23	At5g60360	AALP (Arabidopsis aleurain-like protease)	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.94	Zm.5272.2.A1_a_at	BE553145	-	-	4e-11	At4g22120	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.93	Zm.6696.1.S1_at	AI374546	hypothetical protein LOC100272810	-	6e-1	At1g15900	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.94	Zm.6616.1.A1_at	CF003465	-	-	8e-1	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.94	Zm.2066.1.A1_at	CF054966	ubiquitin family protein	-	2e+0	At1g12010	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.93	Zm.6252.1.A1_at	CF630074	hypothetical protein LOC100273493	-	8e-9	At1g76200	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage