Co-expression analysis

Gene ID	Zm.6588.1.A1_at
Gene name	hypothetical protein LOC100192010
Homology with Arabidopsis	Similar to At1g78630: emb1473 (embryo defective 1473) (HF=5e-23)
Module size	6 genes
NF	0.67
%ile	89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	Zm.6588.1.A1_at	BM080221	hypothetical protein LOC100192010	-	5e-23	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.95	Zm.3518.1.A1_at	BM337627	-	-	1e+0	At2g22000	PROPEP6 (Elicitor peptide 6 precursor)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.94	Zm.11730.1.S1_at	BM380273	hypothetical protein LOC100272845	-	2e-26	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.2393.1.A1_at	BM268973	hypothetical protein LOC100273606	-	1e-1	At1g36060	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.95	Zm.6567.1.A1_at	BM072999	-	-	2e+0	At5g41030	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.94	Zm.5850.1.A1_at	CF623894	-	-	2e-7	At4g04910	NSF (N-ethylmaleimide sensitive factor)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

Inter-species module comparison

A co-expression module including the barley gene, Contig6936_at, orthologous to the query gene, Zm.6588.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	Contig6936_at	At1g78630	-	-	2e+0	At4g22950	AGL19 (AGAMOUS-LIKE 19)	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig6585_at	At1g78630	-	-	1e-8	At5g58620	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig3870_at	At1g78630	-	-	4e-44	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig10884_at	At1g78630	-	-	3e-3	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig13485_s_at	At1g78630	-	-	4e+0	At5g35631	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig5616_at	At1g78630	-	-	4e-17	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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