Co-expression analysis

Gene ID	Zm.657.1.S1_s_at
Gene name	early light-inducible protein ELIP
Homology with Arabidopsis	Similar to At4g14690: ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) (HF=3e-5)
Module size	19 genes
NF	0.39
%ile	43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.91	Zm.657.1.S1_s_at	AF365951.1	early light-inducible protein ELIP	-	3e-5	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.5020.1.S1_at	AI600437	hypothetical protein LOC100216870	-	1e-5	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.94	Zm.534.1.A1_at	AF276086.1	protein kinase AKINbetagamma-2	-	3e-10	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.94	Zm.4271.4.A1_a_at	BG316519	hypothetical protein LOC100193437 /// hypothetical protein LOC100273684	-	6e-5	At1g02690	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.96	Zm.5086.2.S1_at	CK368957	hypothetical protein LOC100277068	-	2e+0	At3g13686	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.94	Zm.3103.1.A1_a_at	CF623353	hypothetical protein LOC100194107	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.3786.1.S1_at	BG841716	hypothetical protein LOC100273838	-	3e-3	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.237.1.S1_at	AJ011616.1	SBP-domain protein3	-	2e-8	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.95	Zm.16278.1.A1_at	CO532740	hypothetical protein LOC100193038	-	7e-1	At1g31830	amino acid permease family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.7777.1.A1_at	BM079863	F-box domain containing protein	-	5e+0	At5g60964	-	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.477.1.A2_a_at	AY109348.1	brittle stalk-2-like protein 3	-	1e-15	At5g60920	COB (COBRA)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.4546.1.A1_at	BG266283	-	-	2e-1	At5g57300	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.2371.1.S1_at	BM073100	-	-	6e-1	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.94	Zm.5752.1.S1_at	AI649425	hypothetical protein LOC100272294	-	2e+0	At1g48150	MADS-box protein (AGL74 )	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.3892.1.A1_x_at	AF136823.1	Elongation factor 1 alpha	-	1e-175	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.16419.1.S1_at	CF273296	hypothetical protein LOC100276284	-	2e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.95	Zm.33.1.S1_at	M12144.1	alpha zein 19kDa D2	-	7e-1	At1g18265	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.888.1.S1_at	CK828040	hypothetical protein LOC100216750	-	1e-7	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.94	Zm.14337.1.S1_at	AY107073.1	hypothetical protein LOC100191876	-	2e+0	At5g12990	CLE40 (CLAVATA3/ESR-RELATED 40)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	98.5	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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