Co-expression analysis

Gene ID Zm.6559.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g26830: threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (HF=3e-14)
Module size 6 genes
NF 0.66
%ile 87.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.99Zm.6559.1.A1_atCF051688--3e-14At5g26830threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)O.I.H.G.S.X.
0.6077.80.99ZmAffx.607.1.A1_atAI715035--3e+0At1g78150unknown proteinO.I.H.G.S.X.
0.5571.60.99ZmAffx.228.1.A1_atAI670240--5e-2At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5571.60.99Zm.4299.1.S1_atCF046651hypothetical protein LOC100279924-5e-14At3g21630CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1)O.I.H.G.S.X.
0.5065.70.99Zm.19021.1.A1_atCO531319virulence-related protein Nf314-9e-7At2g35780scpl26 (serine carboxypeptidase-like 26)O.I.H.G.S.X.
0.4455.70.99Zm.5267.1.A1_atBM340432copine-1-1e-11At3g01650RGLG1 (RING domain Ligase1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.298.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320468protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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