Co-expression analysis

Gene ID Zm.6557.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g10290: ADL6 (DYNAMIN-LIKE PROTEIN 6) (HF=4e-34)
Module size 6 genes
NF 0.47
%ile 58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.99Zm.6557.1.S1_atCF635193--4e-34At1g10290ADL6 (DYNAMIN-LIKE PROTEIN 6)O.I.H.G.S.X.
0.6031.60.99--O.I.H.G.S.X.
0.5065.70.99Zm.18993.1.S1_atCO528827--3e-3At2g10950BSD domain-containing proteinO.I.H.G.S.X.
0.4455.70.99Zm.13658.1.A1_atAY107148.1hypothetical protein LOC100193262-1e+0At3g50350unknown proteinO.I.H.G.S.X.
0.3538.90.99Zm.2427.1.S1_atAY108148.1hypothetical protein LOC100217316-1e-3At2g43970La domain-containing proteinO.I.H.G.S.X.
0.3233.40.99Zm.8902.1.A1_atCD441345glycosyltransferase-like-6e-11At1g18690transferase/ transferase, transferring glycosyl groupsO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6179.50.99Zm.14074.1.A1_atAY104605.1--2e-11At1g07110F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)O.I.H.G.S.X.
0.6179.50.99Zm.4359.2.A1_x_atAI795776EMB2756-2e+0At5g52160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.6077.80.99ZmAffx.983.1.S1_atAI834087--1e+1At3g04530PPCK2O.I.H.G.S.X.
0.6077.80.99Zm.16505.1.A2_atCF633865--0At5g56030HSP81-2 (HEAT SHOCK PROTEIN 81-2)O.I.H.G.S.X.
0.5775.10.99Zm.19035.1.S1_atCO524966--6e-1At3g66656AGL91O.I.H.G.S.X.
0.5571.60.99Zm.13162.1.A1_atCO521967--9e-3At3g02040SRG3 (senescence-related gene 3)O.I.H.G.S.X.
0.5065.70.99Zm.6961.1.A1_atAY104000.1hypothetical protein LOC100191822-3e-18At3g03340UNE6 (unfertilized embryo sac 6)O.I.H.G.S.X.
0.4455.70.99Zm.663.1.S1_atAF318075.1cis-zeatin O-glucosyltransferase1-7e-1At5g59580UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)O.I.H.G.S.X.
0.4352.80.99ZmAffx.913.1.A1_atAI770960--8e-1At4g20460NAD-dependent epimerase/dehydratase family proteinO.I.H.G.S.X.
0.4048.50.99ZmAffx.752.1.A1_atAI712129dihydroflavonol-4-reductase-1e+1At4g02770PSAD-1 (photosystem I subunit D-1)O.I.H.G.S.X.
0.3742.30.99ZmAffx.459.1.S1_atAI677212--8e-1At1g2691060S ribosomal protein L10 (RPL10B)O.I.H.G.S.X.
0.3641.30.98Zm.3910.1.S1_atBQ485300hypothetical protein LOC100273948-8e+0At4g05590unknown proteinO.I.H.G.S.X.
0.3641.30.99ZmAffx.980.1.S1_atAI714647--3e+0At4g28485unknown proteinO.I.H.G.S.X.
0.3641.30.99Zm.10490.1.A1_atCO526452--6e+0At5g28560unknown proteinO.I.H.G.S.X.
0.3538.90.99Zm.4022.1.S1_a_atX57275.1hypothetical protein LOC100276549-4e-1At5g40420OLEO2 (OLEOSIN 2)O.I.H.G.S.X.
0.3538.90.99ZmAffx.566.1.A1_atAI714636--2e-1At5g05610AL1 (ALFIN-LIKE 1)O.I.H.G.S.X.
0.3336.00.99ZmAffx.734.1.A1_atAI740044--1e+1At5g01670aldose reductase, putativeO.I.H.G.S.X.
0.3336.00.99Zm.9311.2.A1_x_atCB350735hypothetical protein LOC100274965-5e+0At3g17860JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)O.I.H.G.S.X.
0.3336.00.99Zm.12666.1.S1_a_atAY536122.1meg2 protein /// meg4 protein /// meg6 protein-3e-1At1g07480transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)O.I.H.G.S.X.
0.3336.00.99Zm.14784.1.A1_atBG841481--3e+0At3g01175-O.I.H.G.S.X.
0.3336.00.99Zm.15863.1.A1_atBM078830--6e-3At5g49030OVA2 (ovule abortion 2)O.I.H.G.S.X.
0.3336.00.99Zm.8375.1.A1_atBM080176--2e-2At5g25450ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeO.I.H.G.S.X.
0.3336.00.99Zm.155.1.A1_a_atAI667827brittle endosperm1-4e-3At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)O.I.H.G.S.X.
0.3233.40.99Zm.13938.1.A1_atCB350917--4e-117At1g50250FTSH1 (FtsH protease 1)O.I.H.G.S.X.
0.3233.40.99Zm.1361.1.A1_atBM073484hypothetical protein AY105746-2e-1At5g62750unknown proteinO.I.H.G.S.X.
0.3131.60.99--O.I.H.G.S.X.
0.3029.80.98ZmAffx.1133.1.A1_atAW331031UDP-glucose 6-dehydrogenase-3e-6At3g29360UDP-glucose 6-dehydrogenase, putativeO.I.H.G.S.X.
0.3029.80.98Zm.17309.1.A1_atCK369677--4e+0At5g64680unknown proteinO.I.H.G.S.X.
0.3029.80.99Zm.243.1.A1_atCF623867S-domain class receptor-like kinase3-9e-2At2g19130S-locus lectin protein kinase family proteinO.I.H.G.S.X.
0.2928.10.98Zm.13610.1.A1_atAY107563.1LOL3-5e-1At4g03540integral membrane family proteinO.I.H.G.S.X.
0.2928.10.99Zm.7645.1.A1_atBM379053--5e+0At5g46300unknown proteinO.I.H.G.S.X.
0.2928.10.99Zm.14540.2.S1_atAY105526.1RNA-binding region RNP-1-5e+0At3g52105unknown proteinO.I.H.G.S.X.
0.2928.10.99ZmAffx.885.1.A1_atAI770822--2e-4At1g77670aminotransferase class I and II family proteinO.I.H.G.S.X.
0.2928.10.99ZmAffx.786.1.A1_atAI759096--3e-3At1g72450JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)O.I.H.G.S.X.
0.2724.60.98Zm.2723.1.A1_atAW066969hypothetical protein LOC100272708-5e-1At5g28800unknown proteinO.I.H.G.S.X.
0.2724.60.98ZmAffx.985.1.A1_atAI834468--1e+1At4g36900RAP2.10 (related to AP2 10)O.I.H.G.S.X.
0.2724.60.99Zm.5848.1.S1_atCO529387phosphoglycerate mutase gpmB-6e-1At5g62320ATMYB99 (MYB DOMAIN PROTEIN 99)O.I.H.G.S.X.
0.2724.60.99Zm.13706.1.S1_atCF633777--5e-15At3g58640protein kinase family proteinO.I.H.G.S.X.
0.2724.60.99ZmAffx.224.1.A1_atAI670233--8e-1At5g06770KH domain-containing protein / zinc finger (CCCH type) family proteinO.I.H.G.S.X.
0.2724.60.99Zm.9891.1.A1_atBM350582--1e+0At5g27290unknown proteinO.I.H.G.S.X.
0.2622.70.99Zm.19197.1.A1_a_atCA403133hypothetical protein LOC100191319-9e-13At1g65650UCH2O.I.H.G.S.X.
0.2521.30.99ZmAffx.859.1.S1_atAI770696hypothetical protein LOC100278714-8e-1At5g58580ATL63 (ARABIDOPSIS TÓO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.898.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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