Co-expression analysis

Gene ID Zm.6557.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g10290: ADL6 (DYNAMIN-LIKE PROTEIN 6) (HF=4e-34)
Module size 6 genes
NF 0.47
%ile 58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.99Zm.6557.1.S1_atCF635193--4e-34At1g10290ADL6 (DYNAMIN-LIKE PROTEIN 6)O.I.H.G.S.X.
0.6077.80.99--O.I.H.G.S.X.
0.5065.70.99Zm.18993.1.S1_atCO528827--3e-3At2g10950BSD domain-containing proteinO.I.H.G.S.X.
0.4455.70.99Zm.13658.1.A1_atAY107148.1hypothetical protein LOC100193262-1e+0At3g50350unknown proteinO.I.H.G.S.X.
0.3538.90.99Zm.2427.1.S1_atAY108148.1hypothetical protein LOC100217316-1e-3At2g43970La domain-containing proteinO.I.H.G.S.X.
0.3233.40.99Zm.8902.1.A1_atCD441345glycosyltransferase-like-6e-11At1g18690transferase/ transferase, transferring glycosyl groupsO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.898.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1607472_at, orthologous to the query gene, Zm.6557.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7390.81607472_atAt1g10290hypothetical protein LOC100255051-6e-23At1g59610ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3)O.I.H.G.S.X.
0.3548.51607917_atAt1g10290hypothetical protein LOC100249280-1e+0At5g07560GRP20 (GLYCINE-RICH PROTEIN 20)O.I.H.G.S.X.
0.3345.71611617_atAt1g10290hypothetical protein LOC100261039-3e-1At4g12150zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2530.51608283_atAt1g10290hypothetical protein LOC100258698-2e-1At1g26795self-incompatibility protein-relatedO.I.H.G.S.X.
0.2022.41611379_atAt1g10290hypothetical protein LOC100242169-9e-2At5g61500ATG3O.I.H.G.S.X.
0.2022.41616979_s_atAt1g10290hypothetical protein LOC100262599-1e-63At1g75440UBC16 (ubiquitin-conjugating enzyme 16)O.I.H.G.S.X.
0.1414.41620490_atAt1g10290hypothetical protein LOC100246112-6e-1At5g04170calcium-binding EF hand family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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