Co-expression analysis

Gene ID	Zm.6557.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g10290: ADL6 (DYNAMIN-LIKE PROTEIN 6) (HF=4e-34)
Module size	6 genes
NF	0.47
%ile	58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.99	Zm.6557.1.S1_at	CF635193	-	-	4e-34	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99			-	-				O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.18993.1.S1_at	CO528827	-	-	3e-3	At2g10950	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.13658.1.A1_at	AY107148.1	hypothetical protein LOC100193262	-	1e+0	At3g50350	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.99	Zm.2427.1.S1_at	AY108148.1	hypothetical protein LOC100217316	-	1e-3	At2g43970	La domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.8902.1.A1_at	CD441345	glycosyltransferase-like	-	6e-11	At1g18690	transferase/ transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1607472_at, orthologous to the query gene, Zm.6557.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	1607472_at	At1g10290	hypothetical protein LOC100255051	-	6e-23	At1g59610	ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1607917_at	At1g10290	hypothetical protein LOC100249280	-	1e+0	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1611617_at	At1g10290	hypothetical protein LOC100261039	-	3e-1	At4g12150	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1608283_at	At1g10290	hypothetical protein LOC100258698	-	2e-1	At1g26795	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.20	22.4	1611379_at	At1g10290	hypothetical protein LOC100242169	-	9e-2	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.20	22.4	1616979_s_at	At1g10290	hypothetical protein LOC100262599	-	1e-63	At1g75440	UBC16 (ubiquitin-conjugating enzyme 16)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1620490_at	At1g10290	hypothetical protein LOC100246112	-	6e-1	At5g04170	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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