Co-expression analysis

Gene ID	Zm.6521.1.A1_at
Gene name	protein binding protein
Homology with Arabidopsis	Similar to At1g68820: membrane protein, putative (HF=7e-5)
Module size	6 genes
NF	0.49
%ile	63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.6521.1.A1_at	AW067094	protein binding protein	-	7e-5	At1g68820	membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	Zm.832.1.S1_at	AY107728.1	-	-	1e+0	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.6522.2.A1_a_at	AY108423.1	mpv17 / PMP22 family protein	-	2e-4	At1g52870	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.12365.1.S1_at	AY106477.1	hypothetical protein LOC100193020	-	6e-1	At1g69680	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.16508.3.A1_x_at	AI739900	ribosomal protein L39	-	4e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.4339.1.A1_at	AI711931	-	-	1e+0	At1g47410	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.7359.1.S1_at, orthologous to the query gene, Zm.6521.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.7359.1.S1_at	At1g68820	hypothetical protein	-	5e-3	At1g68820	membrane protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.51818.1.S1_s_at	At1g68820	f-box family protein	-	3e-8	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.204236.1.S1_at	At1g68820	hypothetical protein	-	8e-1	At1g19680	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.62804.1.S1_at	At1g68820	hypothetical protein	-	1e-14	At4g32790	exostosin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.2054.1.S1_s_at	At1g68820	cinnamoyl CoA reductase	-	3e-18	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	Ptp.6507.1.S1_at	At1g68820	-	-	2e-3	At3g51730	saposin B domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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