Co-expression analysis

Gene ID Zm.6521.1.A1_at
Gene name protein binding protein
Homology with ArabidopsisSimilar to At1g68820: membrane protein, putative (HF=7e-5)
Module size 6 genes
NF 0.49
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.97Zm.6521.1.A1_atAW067094protein binding protein-7e-5At1g68820membrane protein, putativeO.I.H.G.S.X.
0.6785.80.96Zm.832.1.S1_atAY107728.1--1e+0At1g54140TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)O.I.H.G.S.X.
0.6077.80.97Zm.6522.2.A1_a_atAY108423.1mpv17 / PMP22 family protein-2e-4At1g52870peroxisomal membrane protein-relatedO.I.H.G.S.X.
0.4352.80.97Zm.12365.1.S1_atAY106477.1hypothetical protein LOC100193020-6e-1At1g69680-O.I.H.G.S.X.
0.3641.30.96Zm.16508.3.A1_x_atAI739900ribosomal protein L39-4e-9At3g0219060S ribosomal protein L39 (RPL39B)O.I.H.G.S.X.
0.3233.40.96Zm.4339.1.A1_atAI711931--1e+0At1g47410unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.197.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0706900, orthologous to the query gene, Zm.6521.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7088.4Os03g0706900At1g68820-Zn-finger, RING domain containing protein2e-14At1g73950zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5877.0Os06g0714200At1g68820-Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein8e-19At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.5676.3Os04g0525900At1g68820-Major facilitator superfamily protein1e-18At5g64500membrane protein-relatedO.I.H.G.S.X.
0.5573.7Os04g0517400At1g68820-Conserved hypothetical protein5e-15At5g18480PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)O.I.H.G.S.X.
0.5573.7Os06g0188000At1g68820-Cyclic nucleotide-gated channel C (Fragment)1e-11At4g30360ATCNGC17O.I.H.G.S.X.
0.5168.7Os02g0822400At1g68820-No apical meristem (NAM) protein domain containingprotein5e-3At5g09330anac082 (Arabidopsis NAC domain containing protein 82)O.I.H.G.S.X.
0.4964.4Os02g0581300At1g68820-ASC1 (Alternaria stem canker resistance protein)5e-8At3g25540LAG1O.I.H.G.S.X.
0.4863.7Os09g0281700At1g68820-Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1)1e-17At5g47960ATRABA4CO.I.H.G.S.X.
0.4458.1Os01g0780500At1g68820-SCAMP family protein1e-14At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.4152.4Os06g0116100At1g68820-Serine/threonine-protein kinase MAK (EC 2.7.1.37)(Male germ cell- associated kinase)9e-17At5g45430protein kinase, putativeO.I.H.G.S.X.
0.3541.7Os08g0122000At1g68820-B' regulatory subunit of PP2A6e-12At3g26020serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeO.I.H.G.S.X.
0.3236.3Os01g0141100At1g68820-ATPase of the AAA+ class4e-52At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.
0.3134.5Os02g0823000At1g68820-Protease-associated PA domain containing protein2e-20At1g63690protease-associated (PA) domain-containing proteinO.I.H.G.S.X.
0.3134.5Os06g0301000At1g68820-Zn-finger, RING domain containing protein4e-3At1g65040protein binding / zinc ion bindingO.I.H.G.S.X.
0.3134.5Os01g0338200At1g68820-Mov34/MPN/PAD-1 family protein1e+0At4g16144-O.I.H.G.S.X.
0.2931.1Os01g0556400At1g68820-Heat shock protein DnaJ family protein4e-3At5g05750DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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