Co-expression analysis

Gene ID	Zm.651.1.S1_at
Gene name	methyl binding domain
Homology with Arabidopsis	Similar to At5g40040: 60S acidic ribosomal protein P2 (RPP2E) (HF=4e+0)
Module size	8 genes
NF	0.43
%ile	50.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.93	Zm.651.1.S1_at	AY029558.1	methyl binding domain	-	4e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.95	Zm.4989.1.A1_at	AI932047	hypothetical protein LOC100191629	-	1e-43	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.96	Zm.2748.1.S1_at	BU093107	hypothetical protein LOC100216589	-	2e-3	At1g07840	leucine zipper factor-related	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.6956.1.A1_at	AI714976	hypothetical protein LOC100273212	-	2e-1	At1g07135	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.4077.2.A1_a_at	BG266548	rho GDP-dissociation inhibitor 1	-	1e-9	At1g62450	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.5217.1.A1_at	AW017841	hypothetical protein LOC100279976	-	6e-1	At2g01540	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.16196.1.A1_at	CK985484	pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit	-	7e-6	At1g20950	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.94	Zm.4180.1.S1_at	CD964540	hypothetical protein LOC100275988	-	2e+0	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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