CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.6498.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g10050: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (HF=3e-4)

Module size 6 genes

NF 0.57

%ile 75.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.0 0.97 Zm.6498.1.A1_at AI691894 - - 3e-4 At1g10050 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein O.I. H.G. S.X.
0.67 85.8 0.97 Zm.2376.6.S1_x_at CF020992 cortical cell-delineating protein - 7e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.67 85.8 0.97 Zm.5479.1.A1_at AY109635.1 - - 3e-1 At1g71230 CSN5B (COP9-SIGNALOSOME 5B) O.I. H.G. S.X.
0.55 71.6 0.97 Zm.16449.1.A1_at AY112082.1 - - 1e+0 At3g29034 unknown protein O.I. H.G. S.X.
0.29 28.1 0.97 Zm.19106.1.A1_at CO049276 - - 7e+0 At4g08039 - O.I. H.G. S.X.
0.29 28.1 0.97 Zm.17743.1.S1_at CK370833 - - 2e+1 At3g42180 catalytic/ transferase, transferring glycosyl groups O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	94.0	0.97	Zm.6498.1.A1_at	AI691894	-	-	3e-4	At1g10050	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	O.I.	H.G.	S.X.
0.67	85.8	0.97	Zm.2376.6.S1_x_at	CF020992	cortical cell-delineating protein	-	7e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.67	85.8	0.97	Zm.5479.1.A1_at	AY109635.1	-	-	3e-1	At1g71230	CSN5B (COP9-SIGNALOSOME 5B)	O.I.	H.G.	S.X.
0.55	71.6	0.97	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.97	Zm.19106.1.A1_at	CO049276	-	-	7e+0	At4g08039	-	O.I.	H.G.	S.X.
0.29	28.1	0.97	Zm.17743.1.S1_at	CK370833	-	-	2e+1	At3g42180	catalytic/ transferase, transferring glycosyl groups	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	85.8	0.94	Zm.5428.1.S1_at	AI855040	ubiquitin-like 1-activating enzyme E1A	-	8e-1	At4g24940	SAE1A (SUMO-ACTIVATING ENZYME 1A)	O.I.	H.G.	S.X.
0.57	75.1	0.96	Zm.5909.1.S1_at	AI665315	Hypothetical protein LOC100192467	-	3e+0	At2g01370	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.
0.50	65.7	0.95	Zm.6971.1.A1_at	AY107357.1	-	-	1e-1	At1g58460	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.4654.1.A1_a_at	AI666008	hypothetical protein LOC100272406	-	2e-4	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.6518.1.S1_at	AW927338	plastid-lipid-associated protein 2	-	2e-4	At4g04020	FIB (FIBRILLIN)	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.6569.7.A1_x_at	CF631255	40S ribosomal protein S15	-	4e-41	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.
0.39	45.6	0.93	Zm.11946.1.A1_at	BM382035	-	-	2e+0	At1g77093	-	O.I.	H.G.	S.X.
0.38	44.2	0.93	Zm.4522.1.S1_at	AI734575	hypothetical protein LOC100194076	-	4e-1	At1g56710	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.6721.6.A1_at	CK371147	Histone H4	-	5e-28	At5g59690	histone H4	O.I.	H.G.	S.X.
0.32	33.4	0.93	Zm.5318.1.A1_at	AI619197	-	-	5e-4	At5g13610	unknown protein	O.I.	H.G.	S.X.
0.31	31.6	0.95	Zm.1085.2.A1_at	BQ619399	photosystem I reaction center subunit V	-	1e-8	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	O.I.	H.G.	S.X.
0.31	31.6	0.97	Zm.4753.1.S1_at	CF636516	-	-	3e-3	At1g07990	SIT4 phosphatase-associated family protein	O.I.	H.G.	S.X.
0.30	29.8	0.93	Zm.5751.1.A1_at	AI649424	peroxidase	-	2e+1	At5g50760	auxin-responsive family protein	O.I.	H.G.	S.X.
0.30	29.8	0.96	Zm.13087.2.A1_a_at	CF629954	hypothetical protein LOC100276346	-	3e-4	At5g47860	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.95	Zm.13468.1.S1_at	CD443295	hypothetical protein LOC100274971	-	6e+0	At5g58920	unknown protein	O.I.	H.G.	S.X.
0.28	28.1	0.94	Zm.17639.1.S1_at	CK368504	-	-	5e+0	At3g04830	binding	O.I.	H.G.	S.X.
0.27	24.6	0.90	Zm.18123.1.S1_at	AY591342.1	collagen alpha1-like protein	-	3e-1	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	O.I.	H.G.	S.X.
0.27	24.6	0.93	Zm.5177.1.S1_at	CK394817	ATP-dependent Clp protease ATP-binding subunit clpA	-	2e+0	At5g03710	unknown protein	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.12726.1.S1_at	BE512039	ADP-glucose pyrophosphorylase	-	2e-8	At1g27680	APL2 (ADPGLC-PPASE LARGE SUBUNIT)	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.13707.1.A1_at	BQ547937	rhythmically expressed protein	-	2e-14	At2g41250	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.12119.1.A1_at	AY103752.1	-	-	3e-130	At3g11130	clathrin heavy chain, putative	O.I.	H.G.	S.X.
0.26	22.7	0.91	Zm.4328.1.A1_at	AI711672	hypothetical protein LOC100277618	-	1e+0	At1g43580	unknown protein	O.I.	H.G.	S.X.
0.25	21.3	0.92	Zm.2916.1.S1_at	AW091231	Hypothetical protein LOC100217101	-	4e+0	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.
0.25	21.3	0.93	Zm.2857.1.A1_at	AW231567	-	-	5e+0	At2g17705	unknown protein	O.I.	H.G.	S.X.
0.25	21.3	0.95	Zm.18380.1.A1_at	CO522308	hypothetical protein LOC100191276	-	1e+0	At4g39795	senescence-associated protein-related	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9 98.5 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5 97.5 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Zm.6498.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g10050: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (HF=3e-4)
Module size	6 genes
NF	0.57
%ile	75.1

Co-expression analysis

Gene ID Zm.6498.1.A1_at Gene name Homology with ArabidopsisSimilar to At1g10050: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (HF=3e-4) Module size 6 genes NF 0.57 %ile 75.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.6498.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g10050: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (HF=3e-4)

Module size 6 genes

NF 0.57

%ile 75.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera