Co-expression analysis

Gene ID	Zm.6498.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g10050: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (HF=3e-4)
Module size	6 genes
NF	0.57
%ile	75.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.97	Zm.6498.1.A1_at	AI691894	-	-	3e-4	At1g10050	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.2376.6.S1_x_at	CF020992	cortical cell-delineating protein	-	7e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.5479.1.A1_at	AY109635.1	-	-	3e-1	At1g71230	CSN5B (COP9-SIGNALOSOME 5B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.19106.1.A1_at	CO049276	-	-	7e+0	At4g08039	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.17743.1.S1_at	CK370833	-	-	2e+1	At3g42180	catalytic/ transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

A co-expression module including the grape gene, 1621309_at, orthologous to the query gene, Zm.6498.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.8	1621309_at	At1g10050	hypothetical protein LOC100260621	-	1e+0	At3g42570	peroxidase-related	O.I.	H.G.	S.X.	Please select
0.76	91.5	1620267_at	At1g10050	hypothetical protein LOC100264696	-	7e-9	At5g20140	SOUL heme-binding family protein	O.I.	H.G.	S.X.	Please select
0.74	91.0	1611404_at	At1g10050	hypothetical protein LOC100252476	-	4e-17	At1g18060	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	88.3	1617066_at	At1g10050	hypothetical protein LOC100266170	-	1e-85	At2g26080	AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2)	O.I.	H.G.	S.X.	Please select
0.68	88.0	1620113_at	At1g10050	hypothetical protein LOC100257414	-	2e-105	At1g62750	SCO1 (SNOWY COTYLEDON 1)	O.I.	H.G.	S.X.	Please select
0.66	85.1	1613436_at	At1g10050	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic	-	2e-3	At4g37925	NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)	O.I.	H.G.	S.X.	Please select
0.64	84.7	1609024_s_at	At1g10050	hypothetical protein LOC100242371	-	6e-25	At5g57040	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	1616002_s_at	At1g10050	hypothetical protein LOC100262354	-	2e-100	At2g21330	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.64	84.7	1616659_at	At1g10050	hypothetical protein LOC100261927	-	4e-21	At2g13360	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.63	84.3	1619987_at	At1g10050	hypothetical protein LOC100256191	-	9e-17	At1g64860	SIGA (SIGMA FACTOR A)	O.I.	H.G.	S.X.	Please select
0.61	83.2	1613473_at	At1g10050	hypothetical protein LOC100252456	-	6e-7	At5g64940	ATATH13	O.I.	H.G.	S.X.	Please select
0.61	83.2	1607735_at	At1g10050	hypothetical protein LOC100247534	-	1e-14	At1g29700	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	1622249_at	At1g10050	glycolate oxidase-like	-	6e-153	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.57	79.8	1611267_at	At1g10050	similar to HDA14 (histone deacetylase 14); histone deacetylase	-	1e-16	At4g33470	hda14 (histone deacetylase 14)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1607793_at	At1g10050	hypothetical protein LOC100263187	-	9e-11	At5g02120	OHP (ONE HELIX PROTEIN)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1607753_at	At1g10050	hypothetical protein LOC100263239	-	1e-6	At1g65230	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1620378_at	At1g10050	hypothetical protein LOC100255061	-	5e-81	At4g00370	ANTR2	O.I.	H.G.	S.X.	Please select
0.54	75.7	1618636_at	At1g10050	hypothetical protein LOC100261289	-	0	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.54	75.7	1614178_at	At1g10050	-	-	8e-106	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1612258_at	At1g10050	hypothetical LOC100252450	-	8e-22	At1g17220	FUG1 (fu-gaeri1)	O.I.	H.G.	S.X.	Please select
0.52	73.9	1615926_at	At1g10050	hypothetical protein LOC100264263	-	4e-7	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	O.I.	H.G.	S.X.	Please select
0.48	68.8	1609667_at	At1g10050	similar to HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding	-	8e-77	At3g24430	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1617345_s_at	At1g10050	hypothetical protein LOC100247984	-	3e-21	At1g64720	CP5	O.I.	H.G.	S.X.	Please select
0.47	67.7	1615602_at	At1g10050	hypothetical protein LOC100264091	-	1e-27	At4g04640	ATPC1	O.I.	H.G.	S.X.	Please select
0.46	66.5	1613102_s_at	At1g10050	hypothetical protein LOC100244092	-	6e-91	At1g32060	PRK (PHOSPHORIBULOKINASE)	O.I.	H.G.	S.X.	Please select
0.45	64.6	1618171_s_at	At1g10050	zeaxanthin epoxidase	-	3e-1	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1622065_at	At1g10050	hypothetical protein LOC100240924	-	1e-27	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	1617382_s_at	At1g10050	hypothetical protein LOC100262344	-	6e-174	At1g68010	HPR	O.I.	H.G.	S.X.	Please select
0.23	27.5	1620292_at	At1g10050	hypothetical protein LOC100264686	-	3e-1	At2g45434	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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