Co-expression analysis

Gene ID	Zm.6498.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g10050: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (HF=3e-4)
Module size	6 genes
NF	0.57
%ile	75.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.97	Zm.6498.1.A1_at	AI691894	-	-	3e-4	At1g10050	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.2376.6.S1_x_at	CF020992	cortical cell-delineating protein	-	7e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.5479.1.A1_at	AY109635.1	-	-	3e-1	At1g71230	CSN5B (COP9-SIGNALOSOME 5B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.19106.1.A1_at	CO049276	-	-	7e+0	At4g08039	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.17743.1.S1_at	CK370833	-	-	2e+1	At3g42180	catalytic/ transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.114780.1.A1_at, orthologous to the query gene, Zm.6498.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	93.8	PtpAffx.114780.1.A1_at	At1g10050	-	-	3e-5	At1g58370	RXF12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.128139.1.A1_at	At1g10050	hypothetical protein	-	3e-14	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	Ptp.7121.1.S1_at	At1g10050	hypothetical protein	-	2e-25	At2g16460	metal ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.202753.1.S1_at	At1g10050	hypothetical protein	-	9e-9	At1g19400	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.217164.1.S1_at	At1g10050	-	-	2e-1	At1g52080	AR791	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.211392.1.S1_at	At1g10050	hypothetical protein	-	4e-7	At1g57610	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.201426.1.S1_s_at	At1g10050	hypothetical protein	-	3e-53	At4g10440	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.156764.1.S1_at	At1g10050	hypothetical protein	-	2e-19	At3g12600	atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.159340.1.A1_at	At1g10050	hypothetical protein	-	8e+0	At5g38890	exoribonuclease-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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