Co-expression analysis

Gene ID Zm.6498.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g10050: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (HF=3e-4)
Module size 6 genes
NF 0.57
%ile 75.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.97Zm.6498.1.A1_atAI691894--3e-4At1g10050glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinO.I.H.G.S.X.
0.6785.80.97Zm.2376.6.S1_x_atCF020992cortical cell-delineating protein-7e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.6785.80.97Zm.5479.1.A1_atAY109635.1--3e-1At1g71230CSN5B (COP9-SIGNALOSOME 5B)O.I.H.G.S.X.
0.5571.60.97Zm.16449.1.A1_atAY112082.1--1e+0At3g29034unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.19106.1.A1_atCO049276--7e+0At4g08039-O.I.H.G.S.X.
0.2928.10.97Zm.17743.1.S1_atCK370833--2e+1At3g42180catalytic/ transferase, transferring glycosyl groupsO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.898.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM205422Mo17xB73 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0456700, orthologous to the query gene, Zm.6498.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8696.4Os07g0456700At1g10050-(1,4)-beta-xylan endohydrolase (EC 3.2.1.8)1e-1At1g58370RXF12O.I.H.G.S.X.
0.2727.5Os12g0239200At1g10050-Hypothetical protein4e-8At1g27850unknown proteinO.I.H.G.S.X.
0.1712.6Os01g0585600At1g10050-Protein of unknown function DUF630 domaincontaining protein4e-1At1g61105disease resistance protein-relatedO.I.H.G.S.X.
0.042.0Os04g0485200At1g10050-UBX domain containing protein1e-2At2g18530protein kinase family proteinO.I.H.G.S.X.
0.031.4Os02g0758100At1g10050-LMBR1-like conserved region domain containingprotein2e-30At5g65290LMBR1 integral membrane family proteinO.I.H.G.S.X.
0.031.4Os06g0102300At1g10050-Phytochelatin synthase1e-3At1g03980ATPCS2 (phytochelatin synthase 2)O.I.H.G.S.X.
0.031.4Os02g0128600At1g10050-ADP-ribosylation factor4e-14At3g03120ATARFB1C (ADP-ribosylation factor B1C)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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