Co-expression analysis

Gene ID	Zm.6498.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g10050: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (HF=3e-4)
Module size	6 genes
NF	0.57
%ile	75.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.97	Zm.6498.1.A1_at	AI691894	-	-	3e-4	At1g10050	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.2376.6.S1_x_at	CF020992	cortical cell-delineating protein	-	7e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.5479.1.A1_at	AY109635.1	-	-	3e-1	At1g71230	CSN5B (COP9-SIGNALOSOME 5B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.19106.1.A1_at	CO049276	-	-	7e+0	At4g08039	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.17743.1.S1_at	CK370833	-	-	2e+1	At3g42180	catalytic/ transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

A co-expression module including the barley gene, EBes01_SQ002_D15_at, orthologous to the query gene, Zm.6498.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	EBes01_SQ002_D15_at	At1g10050	-	-	5e-2	At1g15370	-	O.I.	H.G.	S.X.	Please select
0.78	91.2	Contig21807_at	At1g10050	-	-	9e-8	At1g69270	RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig11662_s_at	At1g10050	-	-	7e+0	At5g07410	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	HA26O15r_at	At1g10050	-	-	1e-2	At3g14225	GLIP4	O.I.	H.G.	S.X.	Please select
0.55	72.0	HVSMEf0004P17f_at	At1g10050	-	-	6e-2	At1g79920	ATP binding	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig12923_at	At1g10050	-	-	6e+0	At2g45695	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	HA26C03r_at	At1g10050	-	-	4e+0	At1g23074	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig1614_at	At1g10050	-	-	5e+0	At3g21590	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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