Co-expression analysis

Gene ID	Zm.6498.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g10050: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (HF=3e-4)
Module size	6 genes
NF	0.57
%ile	75.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.97	Zm.6498.1.A1_at	AI691894	-	-	3e-4	At1g10050	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.2376.6.S1_x_at	CF020992	cortical cell-delineating protein	-	7e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.5479.1.A1_at	AY109635.1	-	-	3e-1	At1g71230	CSN5B (COP9-SIGNALOSOME 5B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.19106.1.A1_at	CO049276	-	-	7e+0	At4g08039	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.17743.1.S1_at	CK370833	-	-	2e+1	At3g42180	catalytic/ transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL702Contig1_at, orthologous to the query gene, Zm.6498.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	93.7	PsAffx.CL702Contig1_at	At1g10050	-	-	3e-1	At5g44550	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	PsAffx.CL2342Contig1_s_at	At1g10050	-	-	1e+0	At5g36960	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	PsAffx.CL147Contig3_at	At1g10050	-	-	6e-2	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	O.I.	H.G.	S.X.	Please select
0.54	74.8	PsAffx.C113000018_at	At1g10050	-	-	2e+0	At2g41690	AT-HSFB3	O.I.	H.G.	S.X.	Please select
0.49	68.3	PsAffx.C68000043_s_at	At1g10050	-	-	5e-1	At2g24310	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	PsAffx.CL1687Contig1_at	At1g10050	-	-	2e+0	At3g47720	SRO4 (SIMILAR TO RCD ONE 4)	O.I.	H.G.	S.X.	Please select
0.44	63.3	PsAffx.psZO001iA08r_s_at	At1g10050	-	-	6e-1	At3g48590	NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.43	60.6	PsAffx.psHB040xF22f_s_at	At1g10050	-	-	1e+1	At5g05360	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	PsAffx.C24000006_at	At1g10050	-	-	9e+0	At5g66658	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	PsAffx.C94000051_at	At1g10050	-	-	2e-1	At5g64400	-	O.I.	H.G.	S.X.	Please select
0.41	58.1	PsAffx.C144000008_at	At1g10050	-	-	2e+0	At3g20090	CYP705A18	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.CL666Contig1_at	At1g10050	-	-	2e+0	At4g28840	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	PsAffx.CL1471Contig1_at	At1g10050	-	-	3e-1	At3g29780	RALFL27 (ralf-like 27)	O.I.	H.G.	S.X.	Please select
0.37	51.7	PsAffx.C143000013_at	At1g10050	-	-	2e+0	At5g49800	-	O.I.	H.G.	S.X.	Please select
0.33	46.1	PsAffx.C220000010_at	At1g10050	-	-	3e-1	At1g75170	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	PsAffx.C95000059_at	At1g10050	-	-	2e+0	At5g15640	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	PsAffx.psHA001iC01r_at	At1g10050	-	-	7e-2	At2g19040	RALFL12 (RALF-LIKE 12)	O.I.	H.G.	S.X.	Please select
0.29	39.0	PsAffx.CL2351Contig1_at	At1g10050	-	-	1e-3	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	O.I.	H.G.	S.X.	Please select
0.29	39.0	PsAffx.C141000043_at	At1g10050	-	-	2e-1	At1g74440	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	PsAffx.C72000043_s_at	At1g10050	-	-	9e-2	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.28	39.0	PsAffx.CL1536Contig1_s_at	At1g10050	-	-	2e+1	At5g16453	-	O.I.	H.G.	S.X.	Please select
0.27	35.7	PsAffx.CL1910Contig1_at	At1g10050	-	-	5e+0	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	PsAffx.C38000116_s_at	At1g10050	-	-	2e-1	At5g15690	-	O.I.	H.G.	S.X.	Please select
0.25	32.6	PsAffx.psHB015xO10f_at	At1g10050	-	-	7e-2	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	PsAffx.C97000028_at	At1g10050	-	-	1e+0	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	O.I.	H.G.	S.X.	Please select
0.23	29.9	PsAffx.psMY007iE09r_s_at	At1g10050	-	-	3e+0	At4g24590	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	PsAffx.CL1169Contig1_at	At1g10050	-	-	5e+0	At1g15400	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	PsAffx.C176000026_at	At1g10050	-	-	7e+0	At5g44265	lipid binding	O.I.	H.G.	S.X.	Please select
0.19	23.7	PsAffx.CL830Contig1_at	At1g10050	-	-	1e+1	At5g24930	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	PsAffx.C200000014_at	At1g10050	-	-	1e-1	At3g14130	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.15	18.7	PsAffx.C217000003_at	At1g10050	-	-	8e-1	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.12	15.1	PsAffx.C10000040_at	At1g10050	-	-	4e-1	At3g50690	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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