Co-expression analysis

Gene ID Zm.6436.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g07950: surfeit locus protein 5 family protein / SURF5 family protein (HF=1e+0)
Module size 16 genes
NF 0.40
%ile 44.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.97Zm.6436.1.A1_atAI665672--1e+0At1g07950surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.5571.60.98ZmAffx.960.1.S1_atAI833639--3e+0At2g19640ASHR2 (ASH1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.4759.90.98Zm.19275.1.A1_atBM080650hypothetical protein LOC100191349-3e-1At3g12390nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeO.I.H.G.S.X.
0.4759.90.98Zm.15967.1.S1_atCA404149--2e-4At5g26830threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)O.I.H.G.S.X.
0.4658.40.99Zm.13662.1.A1_atAY107114.1--4e+0At2g40740WRKY55O.I.H.G.S.X.
0.4556.40.98Zm.9948.1.A1_atCB3507883-N-debenzoyl-2-deoxytaxol N-benzoyltransferase-2e+0At1g54575unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.2266.1.A1_s_atAW330883--5e+0At3g44940unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.11590.1.A1_atBM379183leucoanthocyanidin dioxygenase-5e-3At5g20400oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.3945.60.98Zm.12454.1.A1_atCF629114hypothetical protein LOC100273736-6e-3At1g10640polygalacturonaseO.I.H.G.S.X.
0.3336.00.99Zm.10517.1.S1_atCO533971hypothetical protein LOC100272293-3e-16At1g224102-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeO.I.H.G.S.X.
0.3336.00.99ZmAffx.1014.1.S1_atAI881465--2e-1At1g59750ARF1 (AUXIN RESPONSE FACTOR 1)O.I.H.G.S.X.
0.3131.60.98ZmAffx.1198.1.A1_atBE056195--2e-1At1g75040PR5 (PATHOGENESIS-RELATED GENE 5)O.I.H.G.S.X.
0.3131.60.98Zm.17447.1.A1_atCK348160--3e+0At5g25940early nodulin-relatedO.I.H.G.S.X.
0.3029.80.99Zm.7791.1.A1_atBM382756hypothetical protein LOC100191966-3e-8At4g15960catalytic/ epoxide hydrolaseO.I.H.G.S.X.
0.3029.80.98Zm.2008.1.A1_atCF623731hypothetical protein LOC100279662-8e-8At3g02990ATHSFA1EO.I.H.G.S.X.
0.2115.50.99Zm.13979.1.S1_atAY106073.1hypothetical protein LOC100273275-8e-22At2g20130LCV1 (LIKE COV 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.598.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
10.398.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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