Co-expression analysis

Gene ID Zm.6416.1.S1_at
Gene name hypothetical protein LOC100277106
Homology with ArabidopsisSimilar to At5g22880: HTB2 (HF=3e+0)
Module size 12 genes
NF 0.47
%ile 59.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.96Zm.6416.1.S1_atBQ744568hypothetical protein LOC100277106-3e+0At5g22880HTB2O.I.H.G.S.X.
0.6986.50.97--O.I.H.G.S.X.
0.6481.70.97Zm.3623.1.S1_atBG873827hypothetical protein LOC100216808-7e+0At5g52440HCF106O.I.H.G.S.X.
0.5674.40.97ZmAffx.1315.1.S1_at40794996-143--2e+0At5g41080glycerophosphoryl diester phosphodiesterase family proteinO.I.H.G.S.X.
0.5469.80.97Zm.5008.1.A1_atAY108557.1hypothetical protein LOC100275589-2e-29At5g54870unknown proteinO.I.H.G.S.X.
0.5267.30.97Zm.157.1.S1_atAY107763.1catalase2-3e-22At4g35090CAT2 (CATALASE 2)O.I.H.G.S.X.
0.4455.70.97Zm.19234.1.A1_atAI622555hypothetical protein LOC100191668-3e-1At1g63120ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)O.I.H.G.S.X.
0.4352.80.97Zm.2758.1.A1_atAW067110--2e-6At2g25730unknown proteinO.I.H.G.S.X.
0.4251.30.97Zm.4204.1.S1_a_atAY103547.1--2e-26At2g24200cytosol aminopeptidaseO.I.H.G.S.X.
0.4251.30.97Zm.3975.1.S1_atAY104816.15a2 protein-2e+1At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.3641.30.97Zm.16988.1.A1_atL10634.1beta-7 tubulin-4e-117At5g23860TUB8O.I.H.G.S.X.
0.3029.80.97Zm.7069.1.S1_atAF036891.2plastid starch synthase I precursor-3e-4At5g24300SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM202299Mo17xB73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.294.5GSM202297Mo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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