Co-expression analysis

Gene ID Zm.6410.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g15630: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.49
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.95Zm.6410.1.A1_atAI691946--2e+0At3g15630unknown proteinO.I.H.G.S.X.
0.7389.90.95Zm.1780.1.A1_atCF629323hypothetical protein LOC100274241-4e-2At5g09400KUP7O.I.H.G.S.X.
0.5775.10.95Zm.16704.1.A1_atAI738374--3e-10Atmg01130-O.I.H.G.S.X.
0.4658.40.96Zm.2263.1.A1_atAW330859--7e-5At2g43050ATPMEPCRDO.I.H.G.S.X.
0.3641.30.95Zm.1404.1.A1_atAY108922.1sugar transport protein 5-7e+0At2g37585glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinO.I.H.G.S.X.
0.2828.10.95Zm.12848.1.A1_atAW037142hypothetical protein LOC100273763-5e-1At1g18780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.798.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.211299.1.S1_at, orthologous to the query gene, Zm.6410.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9399.5PtpAffx.211299.1.S1_atAt3g15630hypothetical protein-6e-6At2g20760protein binding / structural moleculeO.I.H.G.S.X.
0.3559.7Ptp.3801.1.S1_atAt3g15630--5e+0At5g50500unknown proteinO.I.H.G.S.X.
0.2543.6PtpAffx.221163.1.S1_atAt3g15630hypothetical protein-2e-66At4g34310unknown proteinO.I.H.G.S.X.
0.1219.6PtpAffx.60959.1.S1_atAt3g15630hypothetical protein-4e+0At2g2771060S acidic ribosomal protein P2 (RPP2B)O.I.H.G.S.X.
0.0812.9PtpAffx.50848.1.A1_atAt3g15630hypothetical protein-7e-1At5g07571-O.I.H.G.S.X.
0.069.8PtpAffx.94675.1.A1_atAt3g15630hypothetical protein-5e-2At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.069.8PtpAffx.216005.1.S1_atAt3g15630hypothetical protein-9e-3At2g34140Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.046.9PtpAffx.79508.1.S1_atAt3g15630hypothetical protein-4e-89At5g05920DHS (DEOXYHYPUSINE SYNTHASE)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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