Co-expression analysis

Gene ID Zm.6410.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g15630: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.49
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.95Zm.6410.1.A1_atAI691946--2e+0At3g15630unknown proteinO.I.H.G.S.X.
0.7389.90.95Zm.1780.1.A1_atCF629323hypothetical protein LOC100274241-4e-2At5g09400KUP7O.I.H.G.S.X.
0.5775.10.95Zm.16704.1.A1_atAI738374--3e-10Atmg01130-O.I.H.G.S.X.
0.4658.40.96Zm.2263.1.A1_atAW330859--7e-5At2g43050ATPMEPCRDO.I.H.G.S.X.
0.3641.30.95Zm.1404.1.A1_atAY108922.1sugar transport protein 5-7e+0At2g37585glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinO.I.H.G.S.X.
0.2828.10.95Zm.12848.1.A1_atAW037142hypothetical protein LOC100273763-5e-1At1g18780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.798.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os10g0485000, orthologous to the query gene, Zm.6410.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.8Os10g0485000At3g15630-WW/Rsp5/WWP domain containing protein4e-1At3g19840FF domain-containing protein / WW domain-containing proteinO.I.H.G.S.X.
0.5068.0Os03g0754900At3g15630-Cleavage stimulation factor 50K chain (Cleavagestimulation factor 50)2e-1At5g60940transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4762.3Os02g0633100At3g15630-Winged helix DNA-binding domain containing protein7e-1Atcg00150-O.I.H.G.S.X.
0.4458.1Os01g0532200At3g15630-FF domain containing protein1e+0At5g03840TFL1 (TERMINAL FLOWER 1)O.I.H.G.S.X.
0.4051.1Os05g0593300At3g15630-Conserved hypothetical protein6e-9At3g24870DNA bindingO.I.H.G.S.X.
0.3644.0Os03g0129200At3g15630-Ribonuclease II domain containing protein2e-2At2g17510EMB2763 (EMBRYO DEFECTIVE 2763)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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