Co-expression analysis

Gene ID Zm.6410.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g15630: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.49
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.95Zm.6410.1.A1_atAI691946--2e+0At3g15630unknown proteinO.I.H.G.S.X.
0.7389.90.95Zm.1780.1.A1_atCF629323hypothetical protein LOC100274241-4e-2At5g09400KUP7O.I.H.G.S.X.
0.5775.10.95Zm.16704.1.A1_atAI738374--3e-10Atmg01130-O.I.H.G.S.X.
0.4658.40.96Zm.2263.1.A1_atAW330859--7e-5At2g43050ATPMEPCRDO.I.H.G.S.X.
0.3641.30.95Zm.1404.1.A1_atAY108922.1sugar transport protein 5-7e+0At2g37585glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinO.I.H.G.S.X.
0.2828.10.95Zm.12848.1.A1_atAW037142hypothetical protein LOC100273763-5e-1At1g18780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.798.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g15630, orthologous to the query gene, Zm.6410.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5570.6At3g15630820805unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.5065.3At1g11260837667STP1 (SUGAR TRANSPORTER 1)Encodes a H+/hexose cotransporter.O.I.H.G.S.X.
0.5065.3At3g15450820784unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PBOMFO.I.H.G.S.X.
0.4457.2At2g33830817950dormancy/auxin associated family proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3846.7At5g20250832147DIN10 (DARK INDUCIBLE 10)encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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