Co-expression analysis

Gene ID	Zm.6396.1.A1_at
Gene name	protein phosphatase 2C ABI2
Homology with Arabidopsis	Similar to At3g11580: DNA-binding protein, putative (HF=5e+0)
Module size	12 genes
NF	0.29
%ile	26.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.98	Zm.6396.1.A1_at	BI396088	protein phosphatase 2C ABI2	-	5e+0	At3g11580	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.99	ZmAffx.1075.1.A1_at	AI947879	-	-	1e+1	At5g10130	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.99	ZmAffx.954.1.S1_at	AI833471	-	-	3e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.16469.1.S1_at	CF650934	-	-	3e-4	At3g15352	ATCOX17	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.99	Zm.3865.2.A1_at	CF625226	-	-	5e-54	At4g16155	dihydrolipoyl dehydrogenase	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	Zm.13979.1.S1_at	AY106073.1	hypothetical protein LOC100273275	-	8e-22	At2g20130	LCV1 (LIKE COV 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	Zm.16824.3.S1_a_at	CF634707	SAM domain family protein	-	3e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.99	Zm.13944.3.A1_at	AF332175.1	Beta-expansin 8	-	3e-3	At1g27250	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.99	Zm.12526.1.A1_x_at	AI734393	-	-	3e+0	At1g58150	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.99	Zm.1690.1.A1_at	CK347441	density-regulated protein	-	4e-17	At5g11900	eukaryotic translation initiation factor SUI1 family protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.98	ZmAffx.762.1.A1_at	AI746038	-	-	8e-1	At1g78895	-	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.98	Zm.12765.1.A1_at	AI745814	-	-	1e-1	At3g49700	ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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