Co-expression analysis

Gene ID	Zm.6381.1.A1_at
Gene name	hypothetical protein LOC100273528
Homology with Arabidopsis	Similar to At2g42610: LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) (HF=2e+0)
Module size	6 genes
NF	0.77
%ile	96.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.95	Zm.6381.1.A1_at	CO534945	hypothetical protein LOC100273528	-	2e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.95	Zm.1783.1.S1_at	AY109631.1	protein binding protein	-	1e+1	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.94	Zm.4336.1.S1_at	CA403908	hypothetical protein LOC100274309	-	4e+0	At5g38580	-	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.95	Zm.6874.2.S1_at	CF637577	-	-	3e-3	At2g45430	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	Zm.6872.1.A1_at	AI065521	-	-	2e+0	At1g27920	MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.94	Zm.6503.1.A1_at	CK370921	-	-	1e-1	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.9	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.6	98.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.9	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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