Co-expression analysis

Gene ID Zm.6356.1.A1_at
Gene name trafficking protein particle complex subunit 4
Homology with ArabidopsisSimilar to At5g02280: synbindin, putative (HF=1e-5)
Module size 17 genes
NF 0.49
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.96Zm.6356.1.A1_atBM332624trafficking protein particle complex subunit 4-1e-5At5g02280synbindin, putativeO.I.H.G.S.X.
0.6481.70.98Zm.15678.1.A1_atCD440195hypothetical protein LOC100192926-7e+0At4g18280glycine-rich cell wall protein-relatedO.I.H.G.S.X.
0.6179.50.97Zm.12101.2.A1_atAI833552--4e+0At4g34412-O.I.H.G.S.X.
0.5571.60.97Zm.17271.5.A1_atBM269169hypothetical protein LOC100276951-3e-1At2g33430DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)O.I.H.G.S.X.
0.5571.60.97Zm.9854.3.S1_a_atAY109217.1--2e-7At2g44770phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.5469.80.97Zm.17587.1.S1_atCK369775hypothetical protein LOC100193716 /// hypothetical protein LOC100276274-5e+0At5g67420LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)O.I.H.G.S.X.
0.5469.80.98Zm.15852.2.A1_atAY108720.1--1e-41At5g03430phosphoadenosine phosphosulfate (PAPS) reductase family proteinO.I.H.G.S.X.
0.5369.10.97Zm.4335.3.A1_atAY109325.1--1e-3At2g24050MIF4G domain-containing protein / MA3 domain-containing proteinO.I.H.G.S.X.
0.5065.70.97Zm.6054.2.S1_atAY104332.1--6e-4At2g41740VLN2 (VILLIN 2)O.I.H.G.S.X.
0.4455.70.97Zm.2716.1.A1_atCD440659--3e+0At4g28700AMT1O.I.H.G.S.X.
0.4149.70.97Zm.2454.1.A1_atAW216305DNA-binding protein-3e-4At4g25320DNA-binding protein-relatedO.I.H.G.S.X.
0.4048.50.97Zm.7611.2.A1_atBM268818--2e-3At1g49400emb1129 (embryo defective 1129)O.I.H.G.S.X.
0.3945.60.98Zm.13771.1.A1_atAY105545.1hypothetical protein LOC100216812-1e-17At1g72710CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)O.I.H.G.S.X.
0.3945.60.97Zm.11240.1.A1_atBM340894--1e+0At3g5954060S ribosomal protein L38 (RPL38B)O.I.H.G.S.X.
0.3538.90.98Zm.13595.1.A1_atAY107750.1phosphatase phospho1-2e-6At1g73010phosphataseO.I.H.G.S.X.
0.3437.20.97Zm.18485.1.S1_atAY104422.1DNA binding protein-4e-8At1g71260ATWHY2 (A. THALIANA WHIRLY 2)O.I.H.G.S.X.
0.3336.00.97Zm.1364.1.A1_atAW927470structural constituent of ribosome-6e-3At5g27820ribosomal protein L18 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM202319Mo17 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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