Co-expression analysis

Gene ID	Zm.6339.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g11930: glutaredoxin family protein (HF=3e-1)
Module size	17 genes
NF	0.45
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.5	0.99	Zm.6339.1.A1_at	AI691450	-	-	3e-1	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	1.00	Zm.13745.1.S1_at	CK986027	-	-	2e-25	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.99	Zm.2684.1.A1_at	AW066853	-	-	3e+0	At1g49510	emb1273 (embryo defective 1273)	O.I.	H.G.	S.X.	Please select
0.58	75.1	1.00	Zm.12739.1.S1_at	BG835843	SR repressor protein	-	2e-1	At3g55460	SCL30	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.9517.1.A1_at	BM269495	-	-	2e+1	Atmg00630	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.8632.1.A1_at	BM268513	-	-	5e+0	At3g55672	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.12405.1.A1_at	BM381554	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	1.00	Zm.13289.1.S1_at	CA826954	-	-	7e-2	At1g22210	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	1.00	Zm.13664.1.S1_at	BG836397	-	-	6e-17	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	1.00	Zm.16895.1.A1_at	BM075234	-	-	2e+0	At5g15100	PIN8 (PIN-FORMED 8)	O.I.	H.G.	S.X.	Please select
0.45	56.4	1.00	Zm.5775.1.A1_at	AI649573	-	-	1e+1	At3g06600	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.99	ZmAffx.938.1.S1_at	AI820264	-	-	3e+0	At3g21400	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	1.00	Zm.2463.2.S1_at	AW191411	hypothetical protein LOC100193981	-	3e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.99	ZmAffx.571.1.S1_at	AI714687	Hypothetical protein LOC100191288	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.99	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	1.00	Zm.5102.1.S1_at	AI600843	hypothetical protein LOC100273584	-	9e-11	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.5813.1.A1_at	CF056763	hypothetical protein LOC100191474	-	8e-32	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.3	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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