Co-expression analysis

Gene ID Zm.6312.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g20557: unknown protein (HF=1e+0)
Module size 17 genes
NF 0.33
%ile 33.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.98Zm.6312.1.A1_atCF043412--1e+0At3g20557unknown proteinO.I.H.G.S.X.
0.6481.70.98ZmAffx.534.1.A1_atAI711770ubiquitin-conjugating enzyme E2 E3-3e+0At3g50651unknown proteinO.I.H.G.S.X.
0.4455.70.99Zm.8233.3.S1_x_atBQ294345hypothetical protein LOC100194283-5e-7At4g31580SRZ-22O.I.H.G.S.X.
0.4352.80.99Zm.15.1.A1_atAY271262.1NADP malic enzyme3-3e-16At1g79750ATNADP-ME4 (NADP-malic enzyme 4)O.I.H.G.S.X.
0.3945.60.99ZmAffx.827.1.S1_atAI770520Growth-regulating factor 8-like-3e+0At3g21610-O.I.H.G.S.X.
0.3844.20.99ZmAffx.1104.1.A1_atAW191449hypothetical protein LOC100280210-2e-1At2g01960TET14 (TETRASPANIN14)O.I.H.G.S.X.
0.3742.30.98ZmAffx.1198.1.A1_atBE056195--2e-1At1g75040PR5 (PATHOGENESIS-RELATED GENE 5)O.I.H.G.S.X.
0.3641.30.99ZmAffx.917.1.S1_atAI782944--1e+1At5g26810pectinesterase family proteinO.I.H.G.S.X.
0.3131.60.99ZmAffx.918.1.A1_atAI782957--8e-1At3g06750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3131.60.98ZmAffx.912.1.A1_atAI770956--5e-2At4g01580transcriptional factor B3 family proteinO.I.H.G.S.X.
0.3029.80.99Zm.3964.1.A1_a_atAF205603.1ferric-chelate reductase (NADH)2-1e-17At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.3029.80.99Zm.2508.1.A1_atCD447996hypothetical protein LOC100280213-6e-2At5g06260nucleolar protein-relatedO.I.H.G.S.X.
0.2419.80.99Zm.7830.1.S1_atBM080060nucleic acid binding protein-4e-1At2g03190ASK16 (ARABIDOPSIS SKP1-LIKE 16)O.I.H.G.S.X.
0.2014.20.99Zm.12526.1.A1_x_atAI734393--3e+0At1g58150unknown proteinO.I.H.G.S.X.
0.1912.80.99ZmAffx.1316.1.S1_at40794996-30--6e-1At1g78172unknown proteinO.I.H.G.S.X.
0.1912.80.99Zm.12157.1.S1_a_atCF041742PIF-like orf1-6e-1At5g20180ribosomal protein L36 family proteinO.I.H.G.S.X.
0.158.60.99ZmAffx.912.1.S1_atAI770956--5e-2At4g01580transcriptional factor B3 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.598.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
1.888.9GSM205370B73 13 DAP endosperm tissue biological replicate 2GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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