Co-expression analysis

Gene ID	Zm.6307.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g39770: CYT1 (CYTOKINESIS DEFECTIVE 1) (HF=7e-32)
Module size	6 genes
NF	0.22
%ile	17.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.95	Zm.6307.1.A1_at	AI691328	-	-	7e-32	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.9263.1.A1_at	BM347538	-	-	2e+0	At1g64405	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.95	Zm.16694.1.A1_a_at	Z14994.1	-	-	2e-11	At5g53740	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.12531.1.A1_at	AI740174	-	-	2e+0	At3g27328	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.95	Zm.5131.1.A1_at	AI600972	-	-	5e+0	At5g49620	AtMYB78 (myb domain protein 78)	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.95	Zm.13884.1.S1_at	CO524780	hypothetical protein LOC100279722	-	5e-20	At4g38620	MYB4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.1	98.9	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
14.0	98.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
12.9	98.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.0	98.0	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
7.5	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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