Co-expression analysis

Gene ID	Zm.6306.2.A1_at
Gene name	Protein kinase catalytic domain
Homology with Arabidopsis	Similar to At1g35670: ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) (HF=1e-10)
Module size	6 genes
NF	0.56
%ile	74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	Zm.6306.2.A1_at	AI691326	Protein kinase catalytic domain	-	1e-10	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.95	ZmAffx.225.1.S1_at	AI670237	-	-	1e+1	At5g09470	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	Zm.8110.1.A1_at	CF623866	hypothetical protein LOC100278802	-	3e-25	At5g49820	emb1879 (embryo defective 1879)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.4426.1.A1_at	CF017278	hypothetical protein LOC100273544	-	1e+0	At1g78020	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.19299.1.A1_at	BM074654	-	-	4e-3	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.95	Zm.5451.1.S1_at	AI621979	-	-	8e-4	At4g36970	remorin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.1	95.9	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.3	94.7	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the grape gene, 1610635_at, orthologous to the query gene, Zm.6306.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.6	1610635_at	At1g35670	similar to calcium-dependent protein kinase	-	2e-12	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611985_at	At1g35670	hypothetical protein LOC100267021	-	2e-26	At5g15880	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1622837_s_at	At1g35670	similar to putative p115-like protein	-	4e-2	At1g28070	-	O.I.	H.G.	S.X.	Please select
0.38	53.6	1622769_at	At1g35670	hypothetical protein LOC100243302	-	1e-22	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1620363_at	At1g35670	hypothetical protein LOC100265857	-	2e+0	At2g07340	prefoldin-related KE2 family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1622714_at	At1g35670	hypothetical protein LOC100254120	-	2e-12	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1614817_at	At1g35670	hypothetical protein LOC100267905	-	2e-12	At4g33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1616079_at	At1g35670	hypothetical LOC100255014	-	3e-21	At4g03340	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1616331_at	At1g35670	hypothetical protein LOC100261989	-	6e-25	At3g08890	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage