Co-expression analysis

Gene ID	Zm.6306.2.A1_at
Gene name	Protein kinase catalytic domain
Homology with Arabidopsis	Similar to At1g35670: ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) (HF=1e-10)
Module size	6 genes
NF	0.56
%ile	74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	Zm.6306.2.A1_at	AI691326	Protein kinase catalytic domain	-	1e-10	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.95	ZmAffx.225.1.S1_at	AI670237	-	-	1e+1	At5g09470	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.96	Zm.8110.1.A1_at	CF623866	hypothetical protein LOC100278802	-	3e-25	At5g49820	emb1879 (embryo defective 1879)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.4426.1.A1_at	CF017278	hypothetical protein LOC100273544	-	1e+0	At1g78020	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.19299.1.A1_at	BM074654	-	-	4e-3	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.95	Zm.5451.1.S1_at	AI621979	-	-	8e-4	At4g36970	remorin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.1	95.9	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.3	94.7	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8437.1.S1_at, orthologous to the query gene, Zm.6306.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	67.7	Gma.8437.1.S1_at	At1g35670	Calcium-dependent protein kinase SK5	-	8e-23	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	O.I.	H.G.	S.X.	Please select
0.76	89.7	Gma.3107.1.S1_at	At1g35670	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	O.I.	H.G.	S.X.	Please select
0.64	83.4	Gma.5574.1.S1_s_at	At1g35670	-	-	2e-3	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.	Please select
0.63	82.9	Gma.10455.1.S1_at	At1g35670	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.90026.1.S1_s_at	At1g35670	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.56	78.2	Gma.11238.1.S1_at	At1g35670	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.11238.1.S1_a_at	At1g35670	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.4927.1.S1_at	At1g35670	-	-	7e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.68141.1.S1_at	At1g35670	-	-	1e-13	At2g19860	HXK2 (HEXOKINASE 2)	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.1689.1.S1_s_at	At1g35670	6-phosphogluconate dehydrogenase	-	1e-114	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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