CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.6306.2.A1_at

Gene name Protein kinase catalytic domain
Homology with Arabidopsis Similar to At1g35670: ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) (HF=1e-10)

Module size 6 genes

NF 0.56

%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.95 Zm.6306.2.A1_at AI691326 Protein kinase catalytic domain - 1e-10 At1g35670 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) O.I. H.G. S.X.
0.73 89.9 0.95 ZmAffx.225.1.S1_at AI670237 - - 1e+1 At5g09470 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.60 77.8 0.96 Zm.8110.1.A1_at CF623866 hypothetical protein LOC100278802 - 3e-25 At5g49820 emb1879 (embryo defective 1879) O.I. H.G. S.X.
0.50 65.7 0.95 Zm.4426.1.A1_at CF017278 hypothetical protein LOC100273544 - 1e+0 At1g78020 senescence-associated protein-related O.I. H.G. S.X.
0.40 48.5 0.96 Zm.19299.1.A1_at BM074654 - - 4e-3 At4g09270 unknown protein O.I. H.G. S.X.
0.21 15.5 0.95 Zm.5451.1.S1_at AI621979 - - 8e-4 At4g36970 remorin family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 96.9 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3 96.1 GSM202304 B73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.1 95.9 GSM202307 B73xMo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0 95.8 GSM202292 B73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0 95.8 GSM202302 B73xMo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0 95.8 GSM202299 Mo17xB73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0 95.8 GSM202295 Mo17xB73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8 95.5 GSM202306 Mo17xB73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5 95.1 GSM202310 B73 19 day after pollination embryo tissue, biological replicate 1 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.3 94.7 GSM202303 Mo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g35670, orthologous to the query gene, Zm.6306.2.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At1g35670 840471 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) Encodes a Ca(2+)-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress but not by low-temperature stress or heat stress. Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4. O.I. H.G. S.X.
0.86 93.1 At5g07440 830635 GDH2 (GLUTAMATE DEHYDROGENASE 2) Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. O.I. H.G. S.X.
0.33 38.1 At2g17440 816250 leucine-rich repeat family protein F:protein binding;P:unknown;C:plasma membrane;MPBOFVA O.I. H.G. S.X.
0.31 33.8 At4g38470 830003 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation, metabolic process;C:cytosol;MPOBFVA O.I. H.G. S.X.
0.25 22.6 At5g43060 834321 cysteine proteinase, putative / thiol protease, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:response to salt stress;C:vacuole;MOPVBAF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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