Co-expression analysis

Gene ID	Zm.6278.1.S1_at
Gene name	hypothetical protein LOC100277773
Homology with Arabidopsis	Similar to At5g53590: auxin-responsive family protein (HF=2e-2)
Module size	6 genes
NF	0.69
%ile	90.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.6278.1.S1_at	CF015568	hypothetical protein LOC100277773	-	2e-2	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	ZmAffx.1189.1.S1_at	BE025258	hypothetical protein LOC100274447	-	8e-1	At3g04181	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.1293.1.S1_at	AI691500	hypothetical protein LOC100280057	-	2e-4	At3g46210	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.17700.1.S1_at	CK369359	-	-	3e+0	At5g20190	binding	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	ZmAffx.1191.1.A1_at	BE025269	-	-	5e-2	At4g23720	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.5052.1.A1_at	CK145364	hypothetical protein LOC100279399	-	6e+0	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.3	96.1	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.2	96.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.2	96.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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