Co-expression analysis

Gene ID	Zm.6268.1.A1_at
Gene name	hypothetical protein LOC100192813
Homology with Arabidopsis	Similar to At2g16740: UBC29 (ubiquitin-conjugating enzyme 29) (HF=2e-3)
Module size	12 genes
NF	0.46
%ile	55.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.1	0.98	Zm.6268.1.A1_at	BM073308	hypothetical protein LOC100192813	-	2e-3	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	ZmAffx.398.1.A1_at	AI676826	-	-	3e+0	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	ZmAffx.936.1.S1_at	AI677620	-	-	3e+0	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	ZmAffx.996.1.A1_at	AI857152	-	-	3e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.16300.1.A1_at	CF018333	hypothetical protein LOC100193263	-	2e-12	At2g40590	40S ribosomal protein S26 (RPS26B)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.17521.1.S1_at	CK370540	complex 1 protein containing protein	-	2e+0	At4g39340	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.6532.4.S1_a_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.1412.1.A1_at	CA405074	actin-like protein 3	-	3e-50	At1g13180	DIS1 (DISTORTED TRICHOMES 1)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	ZmAffx.1183.1.S1_at	AW927833	bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase 2	-	1e+0	At1g19920	APS2	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.11611.1.A1_at	BM379298	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.5	96.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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