Co-expression analysis

Gene ID	Zm.6207.4.A1_at
Gene name	Hypothetical protein LOC100194345
Homology with Arabidopsis	Similar to At2g04390: 40S ribosomal protein S17 (RPS17A) (HF=6e-19)
Module size	14 genes
NF	0.43
%ile	50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.97	Zm.6207.4.A1_at	BQ538453	Hypothetical protein LOC100194345	-	6e-19	At2g04390	40S ribosomal protein S17 (RPS17A)	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.98	Zm.4795.1.A1_at	BM074194	-	-	8e-2	At3g63230	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.1079.4.S1_at	AY109373.1	-	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.6200.2.S1_a_at	AI714601	Hypothetical protein LOC100191329	-	3e-3	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.97	Zm.15694.1.A1_at	CD441036	-	-	6e-3	At4g22600	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	ZmAffx.1020.1.A1_at	AI881536	-	-	3e-7	At1g75640	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.14497.9.S1_at	BM382119	-	-	2e-15	At5g59910	HTB4	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.796.1.A1_a_at	CK370719	-	-	3e-9	At5g53140	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.384.1.A1_at	AF001635.1	physical impedance induced protein2	-	6e+0	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.6946.2.A1_at	CO528668	Hypothetical protein LOC100191975	-	3e-6	At1g11680	CYP51G1 (CYTOCHROME P450 51G1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.2806.1.A1_a_at	AW067337	-	-	6e-1	At2g41660	MIZ1 (mizu-kussei 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.5712.1.A1_at	AI637069	-	-	1e+1	At5g19875	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.1881.1.S1_at	CF011561	-	-	5e-1	At3g17590	BSH (BUSHY GROWTH)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.5305.1.A1_at	CK370425	ribonucleoprotein A	-	6e-4	At2g37220	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.4	94.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.0	94.0	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.7	93.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.7	93.2	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.7	93.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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