Co-expression analysis

Gene ID Zm.6196.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g26880: tRNA/rRNA methyltransferase (SpoU) family protein (HF=3e+0)
Module size 6 genes
NF 0.56
%ile 73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.6196.2.S1_atAI677134--3e+0At5g26880tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.
0.6785.80.98Zm.3780.1.S1_atAW438304low-molecular-weight cysteine-rich protein LCR69-9e-2At1g47317-O.I.H.G.S.X.
0.5065.70.98Zm.13808.2.A1_a_atAI665043--4e-7At4g03240FH (FRATAXIN HOMOLOG)O.I.H.G.S.X.
0.5065.70.98Zm.4845.1.S1_x_atCD442886alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE-4e-5At4g03330SYP123 (SYNTAXIN OF PLANTS 123)O.I.H.G.S.X.
0.4251.30.97Zm.17701.1.S1_atCK370965hypothetical protein LOC100278172-4e-1At4g19400actin bindingO.I.H.G.S.X.
0.3131.60.98Zm.9411.1.S1_atCA827391SNF1-related protein kinase regulatory subunit beta-2-4e-1At4g26150CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM206325Upper pulvinus 5 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8301.1.A1_at, orthologous to the query gene, Zm.6196.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6786.3Ta.8301.1.A1_atAt5g26880--5e+0At3g25014unknown proteinO.I.H.G.S.X.
0.6182.0Ta.2968.1.S1_atAt5g26880--1e-22At1g26270phosphatidylinositol 3- and 4-kinase family proteinO.I.H.G.S.X.
0.4666.8Ta.3292.1.S1_a_atAt5g26880--2e-26At5g61960AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1)O.I.H.G.S.X.
0.4362.2Ta.1136.1.S1_atAt5g26880EREBP transcription factor-1e-2At3g16770ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)O.I.H.G.S.X.
0.3549.8Ta.11609.2.S1_atAt5g26880--7e-2At3g12740ALIS1 (ALA-INTERACTING SUBUNIT 1)O.I.H.G.S.X.
0.2125.5Ta.11609.1.S1_x_atAt5g26880--9e-7At3g12740ALIS1 (ALA-INTERACTING SUBUNIT 1)O.I.H.G.S.X.
0.1517.1TaAffx.115997.1.S1_s_atAt5g26880--4e-2At1g25375metallo-beta-lactamase family proteinO.I.H.G.S.X.
0.078.6Ta.3036.2.S1_a_atAt5g26880--4e+0At4g2941060S ribosomal protein L28 (RPL28C)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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