Co-expression analysis

Gene ID	Zm.6196.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g26880: tRNA/rRNA methyltransferase (SpoU) family protein (HF=3e+0)
Module size	6 genes
NF	0.56
%ile	73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.6196.2.S1_at	AI677134	-	-	3e+0	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.3780.1.S1_at	AW438304	low-molecular-weight cysteine-rich protein LCR69	-	9e-2	At1g47317	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.13808.2.A1_a_at	AI665043	-	-	4e-7	At4g03240	FH (FRATAXIN HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.4845.1.S1_x_at	CD442886	alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE	-	4e-5	At4g03330	SYP123 (SYNTAXIN OF PLANTS 123)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.17701.1.S1_at	CK370965	hypothetical protein LOC100278172	-	4e-1	At4g19400	actin binding	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.9411.1.S1_at	CA827391	SNF1-related protein kinase regulatory subunit beta-2	-	4e-1	At4g26150	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the wheat gene, Ta.8301.1.A1_at, orthologous to the query gene, Zm.6196.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	Ta.8301.1.A1_at	At5g26880	-	-	5e+0	At3g25014	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.2968.1.S1_at	At5g26880	-	-	1e-22	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.3292.1.S1_a_at	At5g26880	-	-	2e-26	At5g61960	AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.1136.1.S1_at	At5g26880	EREBP transcription factor	-	1e-2	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.11609.2.S1_at	At5g26880	-	-	7e-2	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.11609.1.S1_x_at	At5g26880	-	-	9e-7	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.115997.1.S1_s_at	At5g26880	-	-	4e-2	At1g25375	metallo-beta-lactamase family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.3036.2.S1_a_at	At5g26880	-	-	4e+0	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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