Co-expression analysis

Gene ID Zm.6196.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g26880: tRNA/rRNA methyltransferase (SpoU) family protein (HF=3e+0)
Module size 6 genes
NF 0.56
%ile 73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.6196.2.S1_atAI677134--3e+0At5g26880tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.
0.6785.80.98Zm.3780.1.S1_atAW438304low-molecular-weight cysteine-rich protein LCR69-9e-2At1g47317-O.I.H.G.S.X.
0.5065.70.98Zm.13808.2.A1_a_atAI665043--4e-7At4g03240FH (FRATAXIN HOMOLOG)O.I.H.G.S.X.
0.5065.70.98Zm.4845.1.S1_x_atCD442886alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE-4e-5At4g03330SYP123 (SYNTAXIN OF PLANTS 123)O.I.H.G.S.X.
0.4251.30.97Zm.17701.1.S1_atCK370965hypothetical protein LOC100278172-4e-1At4g19400actin bindingO.I.H.G.S.X.
0.3131.60.98Zm.9411.1.S1_atCA827391SNF1-related protein kinase regulatory subunit beta-2-4e-1At4g26150CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM206325Upper pulvinus 5 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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