Co-expression analysis

Gene ID	Zm.6196.1.A1_a_at
Gene name	hypothetical protein LOC100279988
Homology with Arabidopsis	Similar to At4g35880: aspartyl protease family protein (HF=7e-1)
Module size	6 genes
NF	0.42
%ile	49.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.96	Zm.6196.1.A1_a_at	BG265419	hypothetical protein LOC100279988	-	7e-1	At4g35880	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	ZmAffx.238.1.A1_at	AI670250	-	-	1e+1	At3g62140	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.2143.1.A1_at	BE552530	-	-	1e-7	At5g09860	nuclear matrix protein-related	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.15516.1.S1_at	CK787189	hypothetical protein LOC100279678	-	2e+0	At1g60140	ATTPS10 (trehalose phosphate synthase)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.2960.1.S1_at	CF005604	EMB1688	-	3e-13	At1g67440	emb1688 (embryo defective 1688)	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.97	Zm.1367.1.S1_at	AW927560	-	-	3e-7	At3g13857	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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