Co-expression analysis

Gene ID	Zm.6195.1.A1_x_at
Gene name	hypothetical protein LOC100275106
Homology with Arabidopsis	Similar to At4g17790: - (HF=4e+0)
Module size	6 genes
NF	0.42
%ile	48.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.6195.1.A1_x_at	AI668513	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99			-	-				O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99	Zm.7041.1.S1_at	BI180256	-	-	3e-14	At2g48070	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.6894.1.A1_at	BM380620	-	-	7e-47	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.5825.1.A1_at	AI649790	hypothetical protein LOC100279429	-	1e-2	At1g10390	nucleoporin family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.99	Zm.1693.1.A1_at	BM382165	-	-	4e-3	At3g55670	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
9.0	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.4	97.8	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.3	97.8	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage