Co-expression analysis

Gene ID	Zm.6192.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g52990: pyruvate kinase, putative (HF=5e-1)
Module size	24 genes
NF	0.25
%ile	20.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.95	Zm.6192.1.S1_a_at	CK394758	-	-	5e-1	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.96	Zm.9040.2.A1_a_at	BM339006	hypothetical protein LOC100279670	-	3e-1	At1g71480	nuclear transport factor 2 (NTF2) family protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.3829.1.S1_at	BM335816	-	-	1e-15	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.897.1.A1_at	CD436499	-	-	7e-1	At5g03995	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.17822.1.A1_at	CO521652	hypothetical protein LOC100193034	-	6e+0	At4g14104	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.2879.1.S1_at	AF527609.1	chromdomain-containing protein CRD101	-	2e-1	At3g30220	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.8997.1.A1_at	AY106532.1	hypothetical protein LOC100272754	-	2e-9	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.5754.1.A1_at	CF021134	metallothionein-like protein 1	-	7e-1	At1g07610	MT1C	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.5680.1.A1_at	CF629045	monocopper oxidase	-	4e+0	At5g58780	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.8653.1.A1_at	BM075070	hypothetical protein LOC100276878	-	5e+0	At2g31335	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.7889.1.A1_at	AW091189	Somatic embryogenesis receptor-like kinase3	-	7e-30	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.16977.1.S1_at	AB102956.1	histidine kinase 2	-	4e-20	At1g27320	AHK3 (ARABIDOPSIS HISTIDINE KINASE 3)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.14057.2.A1_at	AF457961.1	-	-	8e-20	At4g22910	FZR2 (FIZZY-RELATED 2)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.1645.1.A1_at	AW573472	hypothetical protein LOC100276209	-	5e+0	At1g64561	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.5878.1.A1_at	BU572163	hypothetical protein LOC100191954	-	6e-9	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.10745.1.A1_at	BQ539349	hypothetical protein LOC100272654	-	4e-3	At4g25990	CIL	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.17636.1.A1_at	CK368463	-	-	1e+0	At5g34882	-	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.7784.1.S1_at	BM079884	eukaryotic translation initiation factor 3 subunit 1 alpha, 35kDa	-	4e-2	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.97	Zm.6532.6.A1_at	CK370644	hypothetical protein LOC100272908 /// abscisic stress ripening protein 2 /// abscisic stress ripening protein 2	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.96	Zm.2042.1.A1_a_at	AY104437.1	protein arginine N-methyltransferase 1	-	2e-6	At4g29510	PRMT11 (ARGININE METHYLTRANSFERASE 11)	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.98	Zm.8935.1.A1_at	BM381068	hypothetical protein LOC100276386	-	7e+0	At3g58470	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.97	Zm.7098.1.A1_at	CK347551	NADH-ubiquinone oxidoreductase 10.5 kDa subunit	-	8e-6	At5g47890	NADH-ubiquinone oxidoreductase B8 subunit, putative	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.97	Zm.5819.1.S1_at	AI649779	-	-	6e-4	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.97	Zm.13759.1.S1_at	CD441609	-	-	6e-15	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM162265	Wild type 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.3	96.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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