Co-expression analysis

Gene ID Zm.6166.3.S1_at
Gene name Hypothetical protein LOC100193965
Homology with ArabidopsisSimilar to At4g35000: APX3 (ASCORBATE PEROXIDASE 3) (HF=2e-6)
Module size 20 genes
NF 0.24
%ile 18.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.94Zm.6166.3.S1_atAI668497Hypothetical protein LOC100193965-2e-6At4g35000APX3 (ASCORBATE PEROXIDASE 3)O.I.H.G.S.X.
0.4251.30.97Zm.4238.1.A1_atBM073006cleavage and polyadenylation specificity factor, 100 kDa subunit-8e-1At2g14282SCRL18 (SCR-Like 18)O.I.H.G.S.X.
0.3437.20.96Zm.7352.1.A1_atCK827464--2e-3At2g01450ATMPK17O.I.H.G.S.X.
0.3029.80.97Zm.7166.1.A1_atAF200532.1cellulose synthase8-3e-36At4g39350CESA2 (CELLULOSE SYNTHASE A2)O.I.H.G.S.X.
0.2928.10.95Zm.16088.1.A1_atCF046660lysM receptor-like kinase-2e-6At4g11480protein kinase family proteinO.I.H.G.S.X.
0.2521.30.96Zm.6630.1.A1_atCA402660hypothetical protein LOC100194042 /// hypothetical protein LOC100276114-1e-22At1g80490TPR1 (TOPLESS-RELATED 1)O.I.H.G.S.X.
0.2318.60.96Zm.4271.5.A1_x_atAI881217hypothetical protein LOC100191665-2e+1At3g55470C2 domain-containing proteinO.I.H.G.S.X.
0.2115.50.98Zm.11823.1.A1_atBM381036Hypothetical protein LOC100191819-2e+1At5g41060zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.2014.20.97Zm.14057.2.S1_atAF457961.1--8e-20At4g22910FZR2 (FIZZY-RELATED 2)O.I.H.G.S.X.
0.2014.20.97Zm.6478.1.S1_atAI692059--4e-21At1g09800tRNA pseudouridine synthase family proteinO.I.H.G.S.X.
0.1710.60.99Zm.5912.2.S1_a_atAI665330IDP277 protein-4e+0At1g08165unknown proteinO.I.H.G.S.X.
0.169.40.98Zm.12750.1.S1_a_atCA402457--9e-16At4g39080VHA-A3 (VACUOLAR PROTON ATPASE A3)O.I.H.G.S.X.
0.169.40.98Zm.13198.2.A1_a_atCA400950--4e+0At3g43432unknown proteinO.I.H.G.S.X.
0.169.40.97Zm.11824.1.A1_atAY313903.1yabby9 protein-4e-12At4g00180YAB3 (YABBY3)O.I.H.G.S.X.
0.169.40.95Zm.4768.1.A1_atAY107116.1hypothetical protein LOC100192636-5e-30At1g64550ATGCN3O.I.H.G.S.X.
0.169.40.96Zm.3892.3.A1_atAF136829.1elongation factor 1 alpha-0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.158.60.98Zm.9880.1.A1_atAY107767.1--1e-7At2g22300SR1 (SIGNAL RESPONSIVE 1)O.I.H.G.S.X.
0.147.70.98Zm.5910.1.S1_atAB018590.1GR2b protein-2e+0At4g31660transcriptional factor B3 family proteinO.I.H.G.S.X.
0.136.80.98Zm.5449.1.A1_atCF636377hypothetical protein LOC100273201-4e-1At5g5460050S ribosomal protein L24, chloroplast (CL24)O.I.H.G.S.X.
0.125.90.98Zm.7149.1.A1_atBQ539356hypothetical protein LOC100275045-2e+0At3g20060UBC19 (ubiquitin-conjugating enzyme19)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.898.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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