Co-expression analysis

Gene ID	Zm.6142.1.A1_at
Gene name	annexin p33
Homology with Arabidopsis	Similar to At5g10220: ANN6 (ANNEXIN ARABIDOPSIS 6) (HF=2e-1)
Module size	7 genes
NF	0.62
%ile	83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	67.3	0.96	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.96	Zm.5851.6.A1_a_at	L46399.1	MADS box protein	-	2e-8	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	Zm.17295.1.A1_at	CK347563	-	-	2e+0	At2g18050	HIS1-3 (HISTONE H1-3)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.4406.1.A1_at	AI834053	splicing factor, arginine/serine-rich 12	-	2e+0	At2g26695	binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.96	Zm.1934.1.S1_s_at	AW519956	hypothetical protein LOC100216744 /// glycerophosphodiester phosphodiesterase	-	3e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.17374.2.A1_a_at	CF637833	-	-	1e+0	At3g43490	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.5796.2.S1_at	AY107655.1	-	-	3e-18	At5g66420	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the grape gene, 1609239_at, orthologous to the query gene, Zm.6142.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	1609239_at	At5g10220	-	-	2e-11	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1613300_at	At5g10220	hypothetical protein LOC100252416	-	1e-6	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1622822_at	At5g10220	aquaporin-like	-	5e-26	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1609613_at	At5g10220	hypothetical protein LOC100251226	-	9e-5	At1g76560	CP12-3	O.I.	H.G.	S.X.	Please select
0.16	16.7	1612329_at	At5g10220	hypothetical protein LOC100257989	-	3e-12	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1613421_at	At5g10220	hypothetical protein LOC100261079	-	2e-4	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.08	8.5	1611035_at	At5g10220	-	-	3e-22	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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