Co-expression analysis

Gene ID	Zm.6139.2.A1_at
Gene name	methionyl-tRNA synthetase
Homology with Arabidopsis	Similar to At2g40660: tRNA-binding region domain-containing protein (HF=1e-5)
Module size	6 genes
NF	0.77
%ile	96.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.6139.2.A1_at	CF018619	methionyl-tRNA synthetase	-	1e-5	At2g40660	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.4746.1.A1_at	BG266536	-	-	3e-3	At1g58030	CAT2 (CATIONIC AMINO ACID TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.6316.1.A1_at	AI691367	-	-	2e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.3468.1.A1_at	BM337587	FYVE zinc finger family protein	-	1e-2	At2g26210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.4882.2.S1_at	CK985806	-	-	9e+0	At3g62920	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.6367.1.S1_at	BM259420	-	-	3e-1	At4g26200	ACS7	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	95.5	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
2.8	93.5	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.8	93.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
2.1	90.8	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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