Co-expression analysis

Gene ID	Zm.6108.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g15290: binding (HF=5e-37)
Module size	7 genes
NF	0.57
%ile	75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.96	Zm.6108.2.S1_at	CA399319	-	-	5e-37	At1g15290	binding	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.95	Zm.2532.1.A1_at	CF624878	-	-	1e+0	At5g21960	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.1837.1.S1_at	CF014756	cp protein	-	1e-2	At5g01610	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.2307.1.S1_at	AY104400.1	hypothetical protein LOC100279946	-	1e-17	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.95	Zm.7012.4.S1_x_at	M95064.1	Ribosomal protein S8	-	5e-12	At5g59240	40S ribosomal protein S8 (RPS8B)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.13205.3.A1_at	AI670579	-	-	6e-2	At1g04645	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.3221.1.S1_at	CF035537	-	-	5e-39	At5g45140	NRPC2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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