CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.6103.3.S1_at

Gene name
Homology with Arabidopsis Similar to At1g21010: unknown protein (HF=8e-1)

Module size 6 genes

NF 0.71

%ile 92.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.6103.3.S1_at AI668289 - - 8e-1 At1g21010 unknown protein O.I. H.G. S.X.
0.80 94.0 0.98 Zm.16462.1.A1_at AY347711.1 Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase - 7e+0 At5g57685 AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3) O.I. H.G. S.X.
0.77 92.1 0.98 Zm.6915.1.S1_at AW256266 hypothetical protein LOC100280116 - 5e-1 At5g64160 unknown protein O.I. H.G. S.X.
0.63 81.1 0.98 Zm.12244.1.A1_at AY105130.1 - - 4e-8 At2g37500 arginine biosynthesis protein ArgJ family O.I. H.G. S.X.
0.56 74.4 0.98 Zm.6916.1.S1_at AW067358 hypothetical protein LOC100273981 - 9e-13 At5g66750 CHR1 (CHROMATIN REMODELING 1) O.I. H.G. S.X.
0.47 59.9 0.98 Zm.3743.2.S1_at AY109746.1 - - 2e+0 At5g04045 Expressed protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.8 99.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7 99.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5 99.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1 98.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320467 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g21010, orthologous to the query gene, Zm.6103.3.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.53 68.6 At1g21010 838695 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. H.G. S.X.
0.33 38.1 At5g66070 836739 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB O.I. H.G. S.X.
0.29 30.3 At2g39660 818549 BIK1 (BOTRYTIS-INDUCED KINASE1) Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. O.I. H.G. S.X.
0.22 17.5 At3g52800 824446 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:response to chitin;C:cellular_component unknown;MPOVF O.I. H.G. S.X.
0.18 11.4 At2g23320 816864 WRKY15 Encodes WRKY DNA-binding protein 15 (WRKY15). O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage