Co-expression analysis

Gene ID Zm.6085.2.A1_a_at
Gene name hypothetical protein LOC100280198
Homology with ArabidopsisSimilar to At5g53820: unknown protein (HF=1e+1)
Module size 17 genes
NF 0.43
%ile 50.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.6085.2.A1_a_atAI759119hypothetical protein LOC100280198-1e+1At5g53820unknown proteinO.I.H.G.S.X.
0.6381.10.99ZmAffx.717.1.A1_atAI739812--8e-1At3g07565DNA bindingO.I.H.G.S.X.
0.5674.40.99Zm.10501.1.S1_atBQ485592hypothetical protein LOC100194407-7e+0At5g66005Expressed proteinO.I.H.G.S.X.
0.5469.80.99ZmAffx.491.1.S1_atAI691520--9e+0At5g11412nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.5469.80.99ZmAffx.406.1.A1_atAI670258--4e-1At2g01505CLE16 (CLAVATA3/ESR-RELATED 16)O.I.H.G.S.X.
0.4352.80.99Zm.7727.1.S1_s_atCK986121polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin-5e-129At5g20620UBQ4O.I.H.G.S.X.
0.4251.30.99Zm.6809.2.A1_a_atAW308676hypothetical protein LOC100273388-5e+0At1g62220unknown proteinO.I.H.G.S.X.
0.4149.70.99ZmAffx.966.1.A1_atAI677247--8e-1At5g47830unknown proteinO.I.H.G.S.X.
0.4149.71.00Zm.3169.5.S1_x_atAI739763minichromosome maintenance protein-1e-1At5g44635minichromosome maintenance family protein / MCM family proteinO.I.H.G.S.X.
0.3844.21.00Zm.15776.1.S1_atBE639950--6e+0At5g46025Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.3742.30.99Zm.13869.1.A1_x_atAF099436.1R2R3MYB-domain protein-4e+0At2g04910glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.3742.30.99ZmAffx.1092.1.S1_s_atAW066155--1e-107Atcg00490-O.I.H.G.S.X.
0.3641.30.99ZmAffx.286.1.S1_atAI670419--2e-1At1g07745RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)O.I.H.G.S.X.
0.3641.30.99Zm.12775.1.A1_x_atCA398576--6e+0At5g15910dehydrogenase-relatedO.I.H.G.S.X.
0.2928.11.00Zm.10216.1.A1_atCD440291hypothetical protein LOC100276703-7e-9At3g05570unknown proteinO.I.H.G.S.X.
0.2724.61.00Zm.14841.1.A1_atAI491693hypothetical protein LOC100191514-2e+0At2g07681cytochrome c biogenesis protein, putativeO.I.H.G.S.X.
0.2521.30.99Zm.9508.1.A1_atBM351117--9e-3At5g28040transcription regulatorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.595.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM385708Deep-sowing 10d treatment IAA, biological rep2GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO
2.692.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM385707Deep-sowing 10d treatment IAA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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